miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26782 3' -54.8 NC_005808.1 + 39056 0.66 0.686594
Target:  5'- gCGcUGUUCGGCGGCAG-CUG-GCa-- -3'
miRNA:   3'- aGC-ACAAGCCGUCGUUaGACgCGccg -5'
26782 3' -54.8 NC_005808.1 + 14829 0.66 0.685479
Target:  5'- uUCGUGUacgugUCcgagccggacgagGGCAGCGAgUUGCGCgagGGCc -3'
miRNA:   3'- -AGCACA-----AG-------------CCGUCGUUaGACGCG---CCG- -5'
26782 3' -54.8 NC_005808.1 + 25654 0.66 0.67543
Target:  5'- ------aCGGCGGCAcgCUGCuggaCGGCg -3'
miRNA:   3'- agcacaaGCCGUCGUuaGACGc---GCCG- -5'
26782 3' -54.8 NC_005808.1 + 41764 0.66 0.67543
Target:  5'- aCGg--UCGGCucGCugucUCUGCGCGcGCu -3'
miRNA:   3'- aGCacaAGCCGu-CGuu--AGACGCGC-CG- -5'
26782 3' -54.8 NC_005808.1 + 39054 0.66 0.67543
Target:  5'- gCGg--UUGGCGGgA--CUGCGCGGUg -3'
miRNA:   3'- aGCacaAGCCGUCgUuaGACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 27382 0.66 0.664224
Target:  5'- aUCGUGUcgaugUCGGCGGaAAUC-GCcauCGGCg -3'
miRNA:   3'- -AGCACA-----AGCCGUCgUUAGaCGc--GCCG- -5'
26782 3' -54.8 NC_005808.1 + 24795 0.66 0.664224
Target:  5'- cCGUGca-GGCGG-AAUaCUGCGCGcGCu -3'
miRNA:   3'- aGCACaagCCGUCgUUA-GACGCGC-CG- -5'
26782 3' -54.8 NC_005808.1 + 16220 0.66 0.664224
Target:  5'- aCGUGagCaGCAGCAAcUCgGUgaGCGGCa -3'
miRNA:   3'- aGCACaaGcCGUCGUU-AGaCG--CGCCG- -5'
26782 3' -54.8 NC_005808.1 + 2423 0.66 0.654112
Target:  5'- -gGUGUaCGGCAGCAggccggccucgaagAUCgGCGCcacgauguugcacaaGGCg -3'
miRNA:   3'- agCACAaGCCGUCGU--------------UAGaCGCG---------------CCG- -5'
26782 3' -54.8 NC_005808.1 + 40453 0.66 0.652986
Target:  5'- aCGUGUaCGGCGGCGcggUUGaC-CGGCu -3'
miRNA:   3'- aGCACAaGCCGUCGUua-GAC-GcGCCG- -5'
26782 3' -54.8 NC_005808.1 + 12258 0.66 0.641729
Target:  5'- aCG-GaUCGGCGGUAGUgucCUGgGCGGg -3'
miRNA:   3'- aGCaCaAGCCGUCGUUA---GACgCGCCg -5'
26782 3' -54.8 NC_005808.1 + 8202 0.66 0.630462
Target:  5'- uUCGUcagcgacaUGGCGGcCAGUUcgUGCGCGGCc -3'
miRNA:   3'- -AGCAcaa-----GCCGUC-GUUAG--ACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 42237 0.66 0.630462
Target:  5'- uUCGUGUUCucgggccuGGCGGaCGGccugCUGCGCGacGCc -3'
miRNA:   3'- -AGCACAAG--------CCGUC-GUUa---GACGCGC--CG- -5'
26782 3' -54.8 NC_005808.1 + 17641 0.67 0.619197
Target:  5'- aUCGUG--CGGCAGUacggccacGAUCUugaugGCGuCGGCg -3'
miRNA:   3'- -AGCACaaGCCGUCG--------UUAGA-----CGC-GCCG- -5'
26782 3' -54.8 NC_005808.1 + 28139 0.67 0.619197
Target:  5'- gUCGgg--CGGCAGCAGcUUGC-CGGUg -3'
miRNA:   3'- -AGCacaaGCCGUCGUUaGACGcGCCG- -5'
26782 3' -54.8 NC_005808.1 + 14884 0.67 0.619197
Target:  5'- ---aGUUgccCGGCuuuCAggGUCUGCGCGGCg -3'
miRNA:   3'- agcaCAA---GCCGuc-GU--UAGACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 41049 0.67 0.619197
Target:  5'- aUCGagcgGUUCGGCuuuaccaaGGCcgaacugCUGgGCGGCg -3'
miRNA:   3'- -AGCa---CAAGCCG--------UCGuua----GACgCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 25766 0.67 0.601201
Target:  5'- cUGcUGggCGGCGGCAA-CgauggccgcgaugcGCGCGGCg -3'
miRNA:   3'- aGC-ACaaGCCGUCGUUaGa-------------CGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 26775 0.67 0.596712
Target:  5'- gCGUGUUCG--AGUc--CUGCGCGGUg -3'
miRNA:   3'- aGCACAAGCcgUCGuuaGACGCGCCG- -5'
26782 3' -54.8 NC_005808.1 + 14797 0.67 0.596712
Target:  5'- gCGaGgaCGuGCuGCGG-CUGCGCGGCg -3'
miRNA:   3'- aGCaCaaGC-CGuCGUUaGACGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.