Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26783 | 3' | -63 | NC_005808.1 | + | 20004 | 0.67 | 0.225894 |
Target: 5'- cUCGCCaacuugcuCGgCAUGGCgCGCCUGCAUc -3' miRNA: 3'- -AGCGGau------GCgGUGCCGgGUGGGCGUA- -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 40732 | 0.67 | 0.225894 |
Target: 5'- gCGCCg--GCCACGGgCUgaACCUGCAa -3' miRNA: 3'- aGCGGaugCGGUGCCgGG--UGGGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 20188 | 0.67 | 0.208532 |
Target: 5'- uUCGCCUugucguCGCCcuCGGUCUuggcagcGCCCGCGg -3' miRNA: 3'- -AGCGGAu-----GCGGu-GCCGGG-------UGGGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 39533 | 0.67 | 0.23713 |
Target: 5'- aUCGCCgaagugggGCGCauucuCGGCUCcuggauuGCCCGCGUg -3' miRNA: 3'- -AGCGGa-------UGCGgu---GCCGGG-------UGGGCGUA- -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 40590 | 0.67 | 0.209074 |
Target: 5'- uUCGCCagcgaGCGCCugGGCcucaagaucagCCACUgGCAg -3' miRNA: 3'- -AGCGGa----UGCGGugCCG-----------GGUGGgCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 5351 | 0.67 | 0.214557 |
Target: 5'- aUCGCgCUGCGUgGCcGCCUGCaCCGCGc -3' miRNA: 3'- -AGCG-GAUGCGgUGcCGGGUG-GGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 40144 | 0.67 | 0.22998 |
Target: 5'- aCGCCUugugcaacaucgugGCGCCGaucuucgaGGCCgGCCUGCu- -3' miRNA: 3'- aGCGGA--------------UGCGGUg-------CCGGgUGGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 41751 | 0.67 | 0.23175 |
Target: 5'- -aGCCaUACagGCCACGGUCgGCUCGCu- -3' miRNA: 3'- agCGG-AUG--CGGUGCCGGgUGGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 681 | 0.67 | 0.237734 |
Target: 5'- cCGCCUACGgCGgcgcCGGCCgGgCCGCc- -3' miRNA: 3'- aGCGGAUGCgGU----GCCGGgUgGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 16269 | 0.67 | 0.237734 |
Target: 5'- -gGCCU-CGCgCGCGGCC-ACCCGgAa -3' miRNA: 3'- agCGGAuGCG-GUGCCGGgUGGGCgUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 23759 | 0.66 | 0.256464 |
Target: 5'- aUGCCgGCGCCACcgGGCCgAUgcgCCGCGg -3' miRNA: 3'- aGCGGaUGCGGUG--CCGGgUG---GGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 33998 | 0.66 | 0.26961 |
Target: 5'- aCGCCUACGCCAUc-CCCACggUCGCc- -3' miRNA: 3'- aGCGGAUGCGGUGccGGGUG--GGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 11840 | 0.66 | 0.276385 |
Target: 5'- -gGCC-GCGCCGCGGUUgGCCUGgGc -3' miRNA: 3'- agCGGaUGCGGUGCCGGgUGGGCgUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 14582 | 0.66 | 0.276385 |
Target: 5'- -gGCUgAUGCCgGCGGCCgAUCCGCu- -3' miRNA: 3'- agCGGaUGCGG-UGCCGGgUGGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 14832 | 0.66 | 0.276385 |
Target: 5'- uUCGCCcaggucgAUGCCguugGCGGCCaGCgCCGCAc -3' miRNA: 3'- -AGCGGa------UGCGG----UGCCGGgUG-GGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 14420 | 0.66 | 0.276385 |
Target: 5'- gUCGCCaggcGCGCCuGCGGCaCCguguugggcgaaACCUGCGg -3' miRNA: 3'- -AGCGGa---UGCGG-UGCCG-GG------------UGGGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 38561 | 0.66 | 0.276385 |
Target: 5'- cUGCCgcuCGCCGCGGCCgGCUuugaagccuauCGCu- -3' miRNA: 3'- aGCGGau-GCGGUGCCGGgUGG-----------GCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 12903 | 0.66 | 0.283295 |
Target: 5'- gUCGCCUuuggcgauGCGCU-CGGCCgCGCCCa--- -3' miRNA: 3'- -AGCGGA--------UGCGGuGCCGG-GUGGGcgua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 10009 | 0.66 | 0.283295 |
Target: 5'- gUGCCgcGCGCC-CGGCCCccGCCCugGUAg -3' miRNA: 3'- aGCGGa-UGCGGuGCCGGG--UGGG--CGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 23091 | 0.66 | 0.283295 |
Target: 5'- cUCGCCccgACGCCaACGGCggCGCCCacgGCGa -3' miRNA: 3'- -AGCGGa--UGCGG-UGCCGg-GUGGG---CGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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