Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26783 | 3' | -63 | NC_005808.1 | + | 42450 | 0.66 | 0.276385 |
Target: 5'- cCGCCUGCggggaaGCC-UGGCgCCACgCCGUAg -3' miRNA: 3'- aGCGGAUG------CGGuGCCG-GGUG-GGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 41980 | 0.75 | 0.061012 |
Target: 5'- aCGCCguguccacgGCGCUGCuGGCCgACCCGCAg -3' miRNA: 3'- aGCGGa--------UGCGGUG-CCGGgUGGGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 41751 | 0.67 | 0.23175 |
Target: 5'- -aGCCaUACagGCCACGGUCgGCUCGCu- -3' miRNA: 3'- agCGG-AUG--CGGUGCCGGgUGGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 40732 | 0.67 | 0.225894 |
Target: 5'- gCGCCg--GCCACGGgCUgaACCUGCAa -3' miRNA: 3'- aGCGGaugCGGUGCCgGG--UGGGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 40590 | 0.67 | 0.209074 |
Target: 5'- uUCGCCagcgaGCGCCugGGCcucaagaucagCCACUgGCAg -3' miRNA: 3'- -AGCGGa----UGCGGugCCG-----------GGUGGgCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 40144 | 0.67 | 0.22998 |
Target: 5'- aCGCCUugugcaacaucgugGCGCCGaucuucgaGGCCgGCCUGCu- -3' miRNA: 3'- aGCGGA--------------UGCGGUg-------CCGGgUGGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 39533 | 0.67 | 0.23713 |
Target: 5'- aUCGCCgaagugggGCGCauucuCGGCUCcuggauuGCCCGCGUg -3' miRNA: 3'- -AGCGGa-------UGCGgu---GCCGGG-------UGGGCGUA- -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 38561 | 0.66 | 0.276385 |
Target: 5'- cUGCCgcuCGCCGCGGCCgGCUuugaagccuauCGCu- -3' miRNA: 3'- aGCGGau-GCGGUGCCGGgUGG-----------GCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 38077 | 0.69 | 0.155968 |
Target: 5'- cCGCCcagcACGCCACguucacgGGCgCCGCCCGUg- -3' miRNA: 3'- aGCGGa---UGCGGUG-------CCG-GGUGGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 37463 | 0.7 | 0.12732 |
Target: 5'- cCGCCUGCGCgGCacguugcaguucaacGGCgCCAgCCGCAc -3' miRNA: 3'- aGCGGAUGCGgUG---------------CCG-GGUgGGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 35978 | 0.68 | 0.188338 |
Target: 5'- gCGCgCaGCGCCACGcGCCCGCUgGuCAUc -3' miRNA: 3'- aGCG-GaUGCGGUGC-CGGGUGGgC-GUA- -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 34081 | 1.05 | 0.00023 |
Target: 5'- aUCGCCUACGCCACGGCCCACCCGCAUc -3' miRNA: 3'- -AGCGGAUGCGGUGCCGGGUGGGCGUA- -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 33998 | 0.66 | 0.26961 |
Target: 5'- aCGCCUACGCCAUc-CCCACggUCGCc- -3' miRNA: 3'- aGCGGAUGCGGUGccGGGUG--GGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 33768 | 0.66 | 0.26961 |
Target: 5'- -gGCCcGCGUUGCGGCUgGCCCGa-- -3' miRNA: 3'- agCGGaUGCGGUGCCGGgUGGGCgua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 32367 | 0.66 | 0.25009 |
Target: 5'- gUCGCCgccgAgGCCcCGGCC-GCCCaGCAg -3' miRNA: 3'- -AGCGGa---UgCGGuGCCGGgUGGG-CGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 31590 | 0.71 | 0.106806 |
Target: 5'- cUCGCCUGgGCCugcuucUGGCCCuACCUGCu- -3' miRNA: 3'- -AGCGGAUgCGGu-----GCCGGG-UGGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 30582 | 0.66 | 0.283295 |
Target: 5'- cUCGCCg--GCCACGGCCgCGCugcuggCCGaCGUg -3' miRNA: 3'- -AGCGGaugCGGUGCCGG-GUG------GGC-GUA- -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 30129 | 0.73 | 0.085521 |
Target: 5'- gCGCCagaacACGCCGcCGGCCUGCaCCGCGUc -3' miRNA: 3'- aGCGGa----UGCGGU-GCCGGGUG-GGCGUA- -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 30089 | 0.76 | 0.043361 |
Target: 5'- gCGCCcggGCGCCACGGCCCuuguCCCagGCGa -3' miRNA: 3'- aGCGGa--UGCGGUGCCGGGu---GGG--CGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 29985 | 0.66 | 0.283295 |
Target: 5'- aUGCCgaGCGCguCGGCgCCAUgCGCAa -3' miRNA: 3'- aGCGGa-UGCGguGCCG-GGUGgGCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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