miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26783 3' -63 NC_005808.1 + 29285 0.7 0.148201
Target:  5'- -aGCCUACGCCGCcuacaacgccGGCCCcggcGCgCUGCAa -3'
miRNA:   3'- agCGGAUGCGGUG----------CCGGG----UG-GGCGUa -5'
26783 3' -63 NC_005808.1 + 28870 0.69 0.171244
Target:  5'- cCGaCCUAUGCCuCGGCCUACCUcaacaaguauuccggGCAg -3'
miRNA:   3'- aGC-GGAUGCGGuGCCGGGUGGG---------------CGUa -5'
26783 3' -63 NC_005808.1 + 28216 0.69 0.160631
Target:  5'- aCGCCUACGuuCCGCGGCgCGgaugccCCCGCc- -3'
miRNA:   3'- aGCGGAUGC--GGUGCCGgGU------GGGCGua -5'
26783 3' -63 NC_005808.1 + 27006 0.66 0.243847
Target:  5'- -gGCCgAUGgCGCGGUgCAUCCGCAg -3'
miRNA:   3'- agCGGaUGCgGUGCCGgGUGGGCGUa -5'
26783 3' -63 NC_005808.1 + 24926 0.79 0.029861
Target:  5'- uUCGCCUACGCC-CaGCCCGCCgaCGCAUc -3'
miRNA:   3'- -AGCGGAUGCGGuGcCGGGUGG--GCGUA- -5'
26783 3' -63 NC_005808.1 + 24509 0.66 0.262314
Target:  5'- gCGuCCUgguucGCGCCggcuucgGCGGCCCAgcacgcacCCCGCGc -3'
miRNA:   3'- aGC-GGA-----UGCGG-------UGCCGGGU--------GGGCGUa -5'
26783 3' -63 NC_005808.1 + 24200 0.68 0.183444
Target:  5'- uUCGCCgacguggcCGCCAcCGGCgCCAUCgGCAa -3'
miRNA:   3'- -AGCGGau------GCGGU-GCCG-GGUGGgCGUa -5'
26783 3' -63 NC_005808.1 + 23878 0.68 0.178663
Target:  5'- cUCGCCccggaaUACGCCAaggaagUGcGCCaCGCCCGCGg -3'
miRNA:   3'- -AGCGG------AUGCGGU------GC-CGG-GUGGGCGUa -5'
26783 3' -63 NC_005808.1 + 23759 0.66 0.256464
Target:  5'- aUGCCgGCGCCACcgGGCCgAUgcgCCGCGg -3'
miRNA:   3'- aGCGGaUGCGGUG--CCGGgUG---GGCGUa -5'
26783 3' -63 NC_005808.1 + 23091 0.66 0.283295
Target:  5'- cUCGCCccgACGCCaACGGCggCGCCCacgGCGa -3'
miRNA:   3'- -AGCGGa--UGCGG-UGCCGg-GUGGG---CGUa -5'
26783 3' -63 NC_005808.1 + 22264 0.66 0.256464
Target:  5'- -aGCCgcaACGaCCACugaaGGCCaGCCCGCAUc -3'
miRNA:   3'- agCGGa--UGC-GGUG----CCGGgUGGGCGUA- -5'
26783 3' -63 NC_005808.1 + 21859 0.66 0.25009
Target:  5'- gCGCCUcuacgGCGCCAgcagcauguCGGCCUgaugggguGCCCGUg- -3'
miRNA:   3'- aGCGGA-----UGCGGU---------GCCGGG--------UGGGCGua -5'
26783 3' -63 NC_005808.1 + 20188 0.67 0.208532
Target:  5'- uUCGCCUugucguCGCCcuCGGUCUuggcagcGCCCGCGg -3'
miRNA:   3'- -AGCGGAu-----GCGGu-GCCGGG-------UGGGCGUa -5'
26783 3' -63 NC_005808.1 + 20004 0.67 0.225894
Target:  5'- cUCGCCaacuugcuCGgCAUGGCgCGCCUGCAUc -3'
miRNA:   3'- -AGCGGau------GCgGUGCCGgGUGGGCGUA- -5'
26783 3' -63 NC_005808.1 + 19073 0.7 0.144256
Target:  5'- cCGCgUGCGCCGCcuggaaGGCgCGCUCGCGg -3'
miRNA:   3'- aGCGgAUGCGGUG------CCGgGUGGGCGUa -5'
26783 3' -63 NC_005808.1 + 18584 0.66 0.276385
Target:  5'- uUCGCUgaaUugGCCgACGcGCCCACCuuCGCc- -3'
miRNA:   3'- -AGCGG---AugCGG-UGC-CGGGUGG--GCGua -5'
26783 3' -63 NC_005808.1 + 17005 0.66 0.276385
Target:  5'- gUUGCCacUGCCugGGCCgCAgaCCGCGg -3'
miRNA:   3'- -AGCGGauGCGGugCCGG-GUg-GGCGUa -5'
26783 3' -63 NC_005808.1 + 16540 0.71 0.106806
Target:  5'- uUCGCCgaGCGCauggaGCGcGCCCGCCgCGCGg -3'
miRNA:   3'- -AGCGGa-UGCGg----UGC-CGGGUGG-GCGUa -5'
26783 3' -63 NC_005808.1 + 16269 0.67 0.237734
Target:  5'- -gGCCU-CGCgCGCGGCC-ACCCGgAa -3'
miRNA:   3'- agCGGAuGCG-GUGCCGGgUGGGCgUa -5'
26783 3' -63 NC_005808.1 + 15003 0.66 0.256464
Target:  5'- aCGaCC-ACGCCAucUGGCgCCGCCUGCu- -3'
miRNA:   3'- aGC-GGaUGCGGU--GCCG-GGUGGGCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.