Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26783 | 3' | -63 | NC_005808.1 | + | 24926 | 0.79 | 0.029861 |
Target: 5'- uUCGCCUACGCC-CaGCCCGCCgaCGCAUc -3' miRNA: 3'- -AGCGGAUGCGGuGcCGGGUGG--GCGUA- -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 15003 | 0.66 | 0.256464 |
Target: 5'- aCGaCC-ACGCCAucUGGCgCCGCCUGCu- -3' miRNA: 3'- aGC-GGaUGCGGU--GCCG-GGUGGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 24509 | 0.66 | 0.262314 |
Target: 5'- gCGuCCUgguucGCGCCggcuucgGCGGCCCAgcacgcacCCCGCGc -3' miRNA: 3'- aGC-GGA-----UGCGG-------UGCCGGGU--------GGGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 29985 | 0.66 | 0.283295 |
Target: 5'- aUGCCgaGCGCguCGGCgCCAUgCGCAa -3' miRNA: 3'- aGCGGa-UGCGguGCCG-GGUGgGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 29285 | 0.7 | 0.148201 |
Target: 5'- -aGCCUACGCCGCcuacaacgccGGCCCcggcGCgCUGCAa -3' miRNA: 3'- agCGGAUGCGGUG----------CCGGG----UG-GGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 38077 | 0.69 | 0.155968 |
Target: 5'- cCGCCcagcACGCCACguucacgGGCgCCGCCCGUg- -3' miRNA: 3'- aGCGGa---UGCGGUG-------CCG-GGUGGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 28870 | 0.69 | 0.171244 |
Target: 5'- cCGaCCUAUGCCuCGGCCUACCUcaacaaguauuccggGCAg -3' miRNA: 3'- aGC-GGAUGCGGuGCCGGGUGGG---------------CGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 14509 | 0.69 | 0.173073 |
Target: 5'- cCGCgacggaauacgACGCCGCGGCCaccuGCCCGCu- -3' miRNA: 3'- aGCGga---------UGCGGUGCCGGg---UGGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 5351 | 0.67 | 0.214557 |
Target: 5'- aUCGCgCUGCGUgGCcGCCUGCaCCGCGc -3' miRNA: 3'- -AGCG-GAUGCGgUGcCGGGUG-GGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 21859 | 0.66 | 0.25009 |
Target: 5'- gCGCCUcuacgGCGCCAgcagcauguCGGCCUgaugggguGCCCGUg- -3' miRNA: 3'- aGCGGA-----UGCGGU---------GCCGGG--------UGGGCGua -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 39533 | 0.67 | 0.23713 |
Target: 5'- aUCGCCgaagugggGCGCauucuCGGCUCcuggauuGCCCGCGUg -3' miRNA: 3'- -AGCGGa-------UGCGgu---GCCGGG-------UGGGCGUA- -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 40590 | 0.67 | 0.209074 |
Target: 5'- uUCGCCagcgaGCGCCugGGCcucaagaucagCCACUgGCAg -3' miRNA: 3'- -AGCGGa----UGCGGugCCG-----------GGUGGgCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 41980 | 0.75 | 0.061012 |
Target: 5'- aCGCCguguccacgGCGCUGCuGGCCgACCCGCAg -3' miRNA: 3'- aGCGGa--------UGCGGUG-CCGGgUGGGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 13020 | 0.66 | 0.243847 |
Target: 5'- gCGCCUGgG-CGCGGCCgACCUGaCGc -3' miRNA: 3'- aGCGGAUgCgGUGCCGGgUGGGC-GUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 16540 | 0.71 | 0.106806 |
Target: 5'- uUCGCCgaGCGCauggaGCGcGCCCGCCgCGCGg -3' miRNA: 3'- -AGCGGa-UGCGg----UGC-CGGGUGG-GCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 24200 | 0.68 | 0.183444 |
Target: 5'- uUCGCCgacguggcCGCCAcCGGCgCCAUCgGCAa -3' miRNA: 3'- -AGCGGau------GCGGU-GCCG-GGUGGgCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 27006 | 0.66 | 0.243847 |
Target: 5'- -gGCCgAUGgCGCGGUgCAUCCGCAg -3' miRNA: 3'- agCGGaUGCgGUGCCGgGUGGGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 22264 | 0.66 | 0.256464 |
Target: 5'- -aGCCgcaACGaCCACugaaGGCCaGCCCGCAUc -3' miRNA: 3'- agCGGa--UGC-GGUG----CCGGgUGGGCGUA- -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 19073 | 0.7 | 0.144256 |
Target: 5'- cCGCgUGCGCCGCcuggaaGGCgCGCUCGCGg -3' miRNA: 3'- aGCGgAUGCGGUG------CCGgGUGGGCGUa -5' |
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26783 | 3' | -63 | NC_005808.1 | + | 28216 | 0.69 | 0.160631 |
Target: 5'- aCGCCUACGuuCCGCGGCgCGgaugccCCCGCc- -3' miRNA: 3'- aGCGGAUGC--GGUGCCGgGU------GGGCGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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