miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26783 3' -63 NC_005808.1 + 21859 0.66 0.25009
Target:  5'- gCGCCUcuacgGCGCCAgcagcauguCGGCCUgaugggguGCCCGUg- -3'
miRNA:   3'- aGCGGA-----UGCGGU---------GCCGGG--------UGGGCGua -5'
26783 3' -63 NC_005808.1 + 9982 0.66 0.276385
Target:  5'- cCGCg-GCGUCGCGGCCCuugaCGCGg -3'
miRNA:   3'- aGCGgaUGCGGUGCCGGGugg-GCGUa -5'
26783 3' -63 NC_005808.1 + 29985 0.66 0.283295
Target:  5'- aUGCCgaGCGCguCGGCgCCAUgCGCAa -3'
miRNA:   3'- aGCGGa-UGCGguGCCG-GGUGgGCGUa -5'
26783 3' -63 NC_005808.1 + 15003 0.66 0.256464
Target:  5'- aCGaCC-ACGCCAucUGGCgCCGCCUGCu- -3'
miRNA:   3'- aGC-GGaUGCGGU--GCCG-GGUGGGCGua -5'
26783 3' -63 NC_005808.1 + 33768 0.66 0.26961
Target:  5'- -gGCCcGCGUUGCGGCUgGCCCGa-- -3'
miRNA:   3'- agCGGaUGCGGUGCCGGgUGGGCgua -5'
26783 3' -63 NC_005808.1 + 42450 0.66 0.276385
Target:  5'- cCGCCUGCggggaaGCC-UGGCgCCACgCCGUAg -3'
miRNA:   3'- aGCGGAUG------CGGuGCCG-GGUG-GGCGUa -5'
26783 3' -63 NC_005808.1 + 13020 0.66 0.243847
Target:  5'- gCGCCUGgG-CGCGGCCgACCUGaCGc -3'
miRNA:   3'- aGCGGAUgCgGUGCCGGgUGGGC-GUa -5'
26783 3' -63 NC_005808.1 + 22264 0.66 0.256464
Target:  5'- -aGCCgcaACGaCCACugaaGGCCaGCCCGCAUc -3'
miRNA:   3'- agCGGa--UGC-GGUG----CCGGgUGGGCGUA- -5'
26783 3' -63 NC_005808.1 + 41751 0.67 0.23175
Target:  5'- -aGCCaUACagGCCACGGUCgGCUCGCu- -3'
miRNA:   3'- agCGG-AUG--CGGUGCCGGgUGGGCGua -5'
26783 3' -63 NC_005808.1 + 30129 0.73 0.085521
Target:  5'- gCGCCagaacACGCCGcCGGCCUGCaCCGCGUc -3'
miRNA:   3'- aGCGGa----UGCGGU-GCCGGGUG-GGCGUA- -5'
26783 3' -63 NC_005808.1 + 681 0.67 0.237734
Target:  5'- cCGCCUACGgCGgcgcCGGCCgGgCCGCc- -3'
miRNA:   3'- aGCGGAUGCgGU----GCCGGgUgGGCGua -5'
26783 3' -63 NC_005808.1 + 14832 0.66 0.276385
Target:  5'- uUCGCCcaggucgAUGCCguugGCGGCCaGCgCCGCAc -3'
miRNA:   3'- -AGCGGa------UGCGG----UGCCGGgUG-GGCGUa -5'
26783 3' -63 NC_005808.1 + 14420 0.66 0.276385
Target:  5'- gUCGCCaggcGCGCCuGCGGCaCCguguugggcgaaACCUGCGg -3'
miRNA:   3'- -AGCGGa---UGCGG-UGCCG-GG------------UGGGCGUa -5'
26783 3' -63 NC_005808.1 + 37463 0.7 0.12732
Target:  5'- cCGCCUGCGCgGCacguugcaguucaacGGCgCCAgCCGCAc -3'
miRNA:   3'- aGCGGAUGCGgUG---------------CCG-GGUgGGCGUa -5'
26783 3' -63 NC_005808.1 + 38561 0.66 0.276385
Target:  5'- cUGCCgcuCGCCGCGGCCgGCUuugaagccuauCGCu- -3'
miRNA:   3'- aGCGGau-GCGGUGCCGGgUGG-----------GCGua -5'
26783 3' -63 NC_005808.1 + 12903 0.66 0.283295
Target:  5'- gUCGCCUuuggcgauGCGCU-CGGCCgCGCCCa--- -3'
miRNA:   3'- -AGCGGA--------UGCGGuGCCGG-GUGGGcgua -5'
26783 3' -63 NC_005808.1 + 10009 0.66 0.283295
Target:  5'- gUGCCgcGCGCC-CGGCCCccGCCCugGUAg -3'
miRNA:   3'- aGCGGa-UGCGGuGCCGGG--UGGG--CGUa -5'
26783 3' -63 NC_005808.1 + 7065 0.71 0.118579
Target:  5'- -gGCCagguacuucaugACGCCGCGGCCUACCCacgGCGc -3'
miRNA:   3'- agCGGa-----------UGCGGUGCCGGGUGGG---CGUa -5'
26783 3' -63 NC_005808.1 + 23091 0.66 0.283295
Target:  5'- cUCGCCccgACGCCaACGGCggCGCCCacgGCGa -3'
miRNA:   3'- -AGCGGa--UGCGG-UGCCGg-GUGGG---CGUa -5'
26783 3' -63 NC_005808.1 + 20004 0.67 0.225894
Target:  5'- cUCGCCaacuugcuCGgCAUGGCgCGCCUGCAUc -3'
miRNA:   3'- -AGCGGau------GCgGUGCCGgGUGGGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.