Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 19013 | 0.68 | 0.196914 |
Target: 5'- uGUCCCacuuguaguGGguGCGguaGCCCUGGuagcGGCCg -3' miRNA: 3'- -CGGGG---------CCguCGCac-CGGGACCu---UCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 20208 | 0.76 | 0.053726 |
Target: 5'- gGUCuuGGCAGCGcccgcggccggcuguUGGCCUUGGguGCCu -3' miRNA: 3'- -CGGggCCGUCGC---------------ACCGGGACCuuCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 20672 | 0.67 | 0.220504 |
Target: 5'- gGCCuuGGuCGGCgGUGacaucuacggcaacaGCCCcgcaaUGGAAGCCu -3' miRNA: 3'- -CGGggCC-GUCG-CAC---------------CGGG-----ACCUUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 21161 | 0.67 | 0.218264 |
Target: 5'- cGCCCUGGUucaacAGCGcGGCCUgcUGcGcGGCCu -3' miRNA: 3'- -CGGGGCCG-----UCGCaCCGGG--AC-CuUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 22744 | 0.67 | 0.241561 |
Target: 5'- uGCCCCaGCAGaGUGgacuuGCCCaGGGugagGGCCg -3' miRNA: 3'- -CGGGGcCGUCgCAC-----CGGGaCCU----UCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 25140 | 0.69 | 0.162632 |
Target: 5'- gGCCCUGGC---GUGGCaCCUGGccucgaugcuggcgGGGCCa -3' miRNA: 3'- -CGGGGCCGucgCACCG-GGACC--------------UUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 25538 | 0.67 | 0.2477 |
Target: 5'- cGCCgCCGGCAGCGcc-CCCgu--AGCCg -3' miRNA: 3'- -CGG-GGCCGUCGCaccGGGaccuUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 26536 | 0.68 | 0.21494 |
Target: 5'- cGCCgCGcGCGGCGgccacgugcgcgaacUGGCCuacaaCUGGcAGGCCa -3' miRNA: 3'- -CGGgGC-CGUCGC---------------ACCGG-----GACC-UUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 27435 | 0.76 | 0.048811 |
Target: 5'- cGCgCCCGGCGGCcgcaGGCCCUGGcgcugguauGCCa -3' miRNA: 3'- -CG-GGGCCGUCGca--CCGGGACCuu-------CGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 27706 | 0.67 | 0.256511 |
Target: 5'- cGCgCCGGCAGCGgcucgccgccggucaUGGaCUUGauGAGGCCc -3' miRNA: 3'- -CGgGGCCGUCGC---------------ACCgGGAC--CUUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 28586 | 0.75 | 0.064131 |
Target: 5'- gGCCaCCGGCAGCGUGGugucggucaguuCCUUGaaccgggcgcggauGAGGCCg -3' miRNA: 3'- -CGG-GGCCGUCGCACC------------GGGAC--------------CUUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 28777 | 0.67 | 0.2477 |
Target: 5'- cGCgCaCGGCGucGCGcuuGCCCUGGuuGCCg -3' miRNA: 3'- -CGgG-GCCGU--CGCac-CGGGACCuuCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 31007 | 0.72 | 0.095436 |
Target: 5'- -gCCCGGCGGCcagccggcGGCCCUGGGcGGCa -3' miRNA: 3'- cgGGGCCGUCGca------CCGGGACCU-UCGg -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 31235 | 0.71 | 0.118794 |
Target: 5'- aCCCCGGC-GCGcGGCCCaGcuacGAGCCg -3' miRNA: 3'- cGGGGCCGuCGCaCCGGGaCc---UUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 32378 | 0.68 | 0.207352 |
Target: 5'- gGCCCCGGCc-----GCCCagcaGGAAGCCa -3' miRNA: 3'- -CGGGGCCGucgcacCGGGa---CCUUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 34317 | 1.12 | 0.000066 |
Target: 5'- uGCCCCGGCAGCGUGGCCCUGGAAGCCg -3' miRNA: 3'- -CGGGGCCGUCGCACCGGGACCUUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 35425 | 0.67 | 0.223902 |
Target: 5'- cGCCCCcGaauccgacaAGCGcccGGCCCUGGucauccAGGCCg -3' miRNA: 3'- -CGGGGcCg--------UCGCa--CCGGGACC------UUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 37972 | 0.66 | 0.287272 |
Target: 5'- aCCCugCGGCAGCGcgGGCCaacauUGGccuGGCUg -3' miRNA: 3'- cGGG--GCCGUCGCa-CCGGg----ACCu--UCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 38211 | 0.66 | 0.294332 |
Target: 5'- aGgCCCGGC-GCGacGGCgCCUGGcuGCg -3' miRNA: 3'- -CgGGGCCGuCGCa-CCG-GGACCuuCGg -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 41303 | 0.7 | 0.155045 |
Target: 5'- cGCCCugggcgCGGCGGUGUGGgcgggcaucaCCUcgaaacuUGGggGCCa -3' miRNA: 3'- -CGGG------GCCGUCGCACC----------GGG-------ACCuuCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home