miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26785 3' -63.1 NC_005808.1 + 682 0.68 0.186939
Target:  5'- cGCCUaCGGCGGCGccGGCCg-GGccGCCc -3'
miRNA:   3'- -CGGG-GCCGUCGCa-CCGGgaCCuuCGG- -5'
26785 3' -63.1 NC_005808.1 + 964 0.68 0.207352
Target:  5'- uGCCCaCGGCAGCuugcagccacuUGGCcgCCUGGcgguGCCg -3'
miRNA:   3'- -CGGG-GCCGUCGc----------ACCG--GGACCuu--CGG- -5'
26785 3' -63.1 NC_005808.1 + 1534 0.7 0.143496
Target:  5'- cGCCCa-GCAGUucGGCCUUGGuaAAGCCg -3'
miRNA:   3'- -CGGGgcCGUCGcaCCGGGACC--UUCGG- -5'
26785 3' -63.1 NC_005808.1 + 1952 0.69 0.161344
Target:  5'- gGUUCUGGUcgAGCGcgcGGCCCUGGGggaaggcacgcuguaGGCCg -3'
miRNA:   3'- -CGGGGCCG--UCGCa--CCGGGACCU---------------UCGG- -5'
26785 3' -63.1 NC_005808.1 + 4044 0.67 0.235549
Target:  5'- gGCCgCGGCgAGCGgcaggccagcGGCCCaggggggauUGGuAGCCa -3'
miRNA:   3'- -CGGgGCCG-UCGCa---------CCGGG---------ACCuUCGG- -5'
26785 3' -63.1 NC_005808.1 + 6339 0.67 0.241561
Target:  5'- cGCCCCaGCcaaAGCGcccGGCCCga-AGGCCg -3'
miRNA:   3'- -CGGGGcCG---UCGCa--CCGGGaccUUCGG- -5'
26785 3' -63.1 NC_005808.1 + 7627 0.66 0.266894
Target:  5'- aGCgCCGGaCA-CGUGGCCUUGGccuuGCa -3'
miRNA:   3'- -CGgGGCC-GUcGCACCGGGACCuu--CGg -5'
26785 3' -63.1 NC_005808.1 + 8166 0.68 0.202075
Target:  5'- cGUCCCuGC-GCGUGcGCCC-GGAugcuGCCg -3'
miRNA:   3'- -CGGGGcCGuCGCAC-CGGGaCCUu---CGG- -5'
26785 3' -63.1 NC_005808.1 + 8861 0.67 0.235549
Target:  5'- aGCCCaggacggugCGGUAGCGUucGGCCUUGGc-GUCc -3'
miRNA:   3'- -CGGG---------GCCGUCGCA--CCGGGACCuuCGG- -5'
26785 3' -63.1 NC_005808.1 + 10241 0.66 0.260365
Target:  5'- gGCCUCGGCGGCGaccGCagcgaCCUGGGcGGCg -3'
miRNA:   3'- -CGGGGCCGUCGCac-CG-----GGACCU-UCGg -5'
26785 3' -63.1 NC_005808.1 + 10457 0.74 0.07437
Target:  5'- cGCCCU--UGGCGUcGCCCUGGAAGUCg -3'
miRNA:   3'- -CGGGGccGUCGCAcCGGGACCUUCGG- -5'
26785 3' -63.1 NC_005808.1 + 11514 0.67 0.235549
Target:  5'- aGCgCCUGcGCuGGCGUgaGGCCCUGcGAGCg -3'
miRNA:   3'- -CG-GGGC-CG-UCGCA--CCGGGACcUUCGg -5'
26785 3' -63.1 NC_005808.1 + 12468 0.68 0.191869
Target:  5'- uGCaggCCGGCGGCGU-GUUCUGGcgcGGCCu -3'
miRNA:   3'- -CGg--GGCCGUCGCAcCGGGACCu--UCGG- -5'
26785 3' -63.1 NC_005808.1 + 13157 0.66 0.280346
Target:  5'- cGCCUcgauguCGGcCAGUGUcGGCCgcgCUGGgcGCCc -3'
miRNA:   3'- -CGGG------GCC-GUCGCA-CCGG---GACCuuCGG- -5'
26785 3' -63.1 NC_005808.1 + 13248 0.74 0.072325
Target:  5'- gGCCaCCGGC-GCGUGGUUCgaGGAcuuGGCCg -3'
miRNA:   3'- -CGG-GGCCGuCGCACCGGGa-CCU---UCGG- -5'
26785 3' -63.1 NC_005808.1 + 13577 0.71 0.118794
Target:  5'- -aCCUGGCcgaAGCGcGGCgCCUGGucGCCu -3'
miRNA:   3'- cgGGGCCG---UCGCaCCG-GGACCuuCGG- -5'
26785 3' -63.1 NC_005808.1 + 14377 0.66 0.287272
Target:  5'- -aCCCGcGCguggucgucGGCGUGGCcgaCCUGGAcaaggcGCCg -3'
miRNA:   3'- cgGGGC-CG---------UCGCACCG---GGACCUu-----CGG- -5'
26785 3' -63.1 NC_005808.1 + 14815 0.67 0.253335
Target:  5'- aCCUCGGCGGCGcUGccuucGCCCaggucgaugccguUGGcGGCCa -3'
miRNA:   3'- cGGGGCCGUCGC-AC-----CGGG-------------ACCuUCGG- -5'
26785 3' -63.1 NC_005808.1 + 17918 0.68 0.191869
Target:  5'- aGCCUgGGCguGGaCGUGGCCCgcggcGGgcGCg -3'
miRNA:   3'- -CGGGgCCG--UC-GCACCGGGa----CCuuCGg -5'
26785 3' -63.1 NC_005808.1 + 18367 0.68 0.188897
Target:  5'- uUgCCGGCGGCGagguUGGCCUugccgauggcgccggUGGcGGCCa -3'
miRNA:   3'- cGgGGCCGUCGC----ACCGGG---------------ACCuUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.