miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26785 3' -63.1 NC_005808.1 + 27706 0.67 0.256511
Target:  5'- cGCgCCGGCAGCGgcucgccgccggucaUGGaCUUGauGAGGCCc -3'
miRNA:   3'- -CGgGGCCGUCGC---------------ACCgGGAC--CUUCGG- -5'
26785 3' -63.1 NC_005808.1 + 32378 0.68 0.207352
Target:  5'- gGCCCCGGCc-----GCCCagcaGGAAGCCa -3'
miRNA:   3'- -CGGGGCCGucgcacCGGGa---CCUUCGG- -5'
26785 3' -63.1 NC_005808.1 + 21161 0.67 0.218264
Target:  5'- cGCCCUGGUucaacAGCGcGGCCUgcUGcGcGGCCu -3'
miRNA:   3'- -CGGGGCCG-----UCGCaCCGGG--AC-CuUCGG- -5'
26785 3' -63.1 NC_005808.1 + 35425 0.67 0.223902
Target:  5'- cGCCCCcGaauccgacaAGCGcccGGCCCUGGucauccAGGCCg -3'
miRNA:   3'- -CGGGGcCg--------UCGCa--CCGGGACC------UUCGG- -5'
26785 3' -63.1 NC_005808.1 + 11514 0.67 0.235549
Target:  5'- aGCgCCUGcGCuGGCGUgaGGCCCUGcGAGCg -3'
miRNA:   3'- -CG-GGGC-CG-UCGCA--CCGGGACcUUCGg -5'
26785 3' -63.1 NC_005808.1 + 22744 0.67 0.241561
Target:  5'- uGCCCCaGCAGaGUGgacuuGCCCaGGGugagGGCCg -3'
miRNA:   3'- -CGGGGcCGUCgCAC-----CGGGaCCU----UCGG- -5'
26785 3' -63.1 NC_005808.1 + 25538 0.67 0.2477
Target:  5'- cGCCgCCGGCAGCGcc-CCCgu--AGCCg -3'
miRNA:   3'- -CGG-GGCCGUCGCaccGGGaccuUCGG- -5'
26785 3' -63.1 NC_005808.1 + 28777 0.67 0.2477
Target:  5'- cGCgCaCGGCGucGCGcuuGCCCUGGuuGCCg -3'
miRNA:   3'- -CGgG-GCCGU--CGCac-CGGGACCuuCGG- -5'
26785 3' -63.1 NC_005808.1 + 14815 0.67 0.253335
Target:  5'- aCCUCGGCGGCGcUGccuucGCCCaggucgaugccguUGGcGGCCa -3'
miRNA:   3'- cGGGGCCGUCGC-AC-----CGGG-------------ACCuUCGG- -5'
26785 3' -63.1 NC_005808.1 + 964 0.68 0.207352
Target:  5'- uGCCCaCGGCAGCuugcagccacuUGGCcgCCUGGcgguGCCg -3'
miRNA:   3'- -CGGG-GCCGUCGc----------ACCG--GGACCuu--CGG- -5'
26785 3' -63.1 NC_005808.1 + 8166 0.68 0.202075
Target:  5'- cGUCCCuGC-GCGUGcGCCC-GGAugcuGCCg -3'
miRNA:   3'- -CGGGGcCGuCGCAC-CGGGaCCUu---CGG- -5'
26785 3' -63.1 NC_005808.1 + 19013 0.68 0.196914
Target:  5'- uGUCCCacuuguaguGGguGCGguaGCCCUGGuagcGGCCg -3'
miRNA:   3'- -CGGGG---------CCguCGCac-CGGGACCu---UCGG- -5'
26785 3' -63.1 NC_005808.1 + 27435 0.76 0.048811
Target:  5'- cGCgCCCGGCGGCcgcaGGCCCUGGcgcugguauGCCa -3'
miRNA:   3'- -CG-GGGCCGUCGca--CCGGGACCuu-------CGG- -5'
26785 3' -63.1 NC_005808.1 + 20208 0.76 0.053726
Target:  5'- gGUCuuGGCAGCGcccgcggccggcuguUGGCCUUGGguGCCu -3'
miRNA:   3'- -CGGggCCGUCGC---------------ACCGGGACCuuCGG- -5'
26785 3' -63.1 NC_005808.1 + 28586 0.75 0.064131
Target:  5'- gGCCaCCGGCAGCGUGGugucggucaguuCCUUGaaccgggcgcggauGAGGCCg -3'
miRNA:   3'- -CGG-GGCCGUCGCACC------------GGGAC--------------CUUCGG- -5'
26785 3' -63.1 NC_005808.1 + 10457 0.74 0.07437
Target:  5'- cGCCCU--UGGCGUcGCCCUGGAAGUCg -3'
miRNA:   3'- -CGGGGccGUCGCAcCGGGACCUUCGG- -5'
26785 3' -63.1 NC_005808.1 + 31235 0.71 0.118794
Target:  5'- aCCCCGGC-GCGcGGCCCaGcuacGAGCCg -3'
miRNA:   3'- cGGGGCCGuCGCaCCGGGaCc---UUCGG- -5'
26785 3' -63.1 NC_005808.1 + 1534 0.7 0.143496
Target:  5'- cGCCCa-GCAGUucGGCCUUGGuaAAGCCg -3'
miRNA:   3'- -CGGGgcCGUCGcaCCGGGACC--UUCGG- -5'
26785 3' -63.1 NC_005808.1 + 682 0.68 0.186939
Target:  5'- cGCCUaCGGCGGCGccGGCCg-GGccGCCc -3'
miRNA:   3'- -CGGG-GCCGUCGCa-CCGGgaCCuuCGG- -5'
26785 3' -63.1 NC_005808.1 + 18367 0.68 0.188897
Target:  5'- uUgCCGGCGGCGagguUGGCCUugccgauggcgccggUGGcGGCCa -3'
miRNA:   3'- cGgGGCCGUCGC----ACCGGG---------------ACCuUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.