miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26785 3' -63.1 NC_005808.1 + 34317 1.12 0.000066
Target:  5'- uGCCCCGGCAGCGUGGCCCUGGAAGCCg -3'
miRNA:   3'- -CGGGGCCGUCGCACCGGGACCUUCGG- -5'
26785 3' -63.1 NC_005808.1 + 27435 0.76 0.048811
Target:  5'- cGCgCCCGGCGGCcgcaGGCCCUGGcgcugguauGCCa -3'
miRNA:   3'- -CG-GGGCCGUCGca--CCGGGACCuu-------CGG- -5'
26785 3' -63.1 NC_005808.1 + 20208 0.76 0.053726
Target:  5'- gGUCuuGGCAGCGcccgcggccggcuguUGGCCUUGGguGCCu -3'
miRNA:   3'- -CGGggCCGUCGC---------------ACCGGGACCuuCGG- -5'
26785 3' -63.1 NC_005808.1 + 28586 0.75 0.064131
Target:  5'- gGCCaCCGGCAGCGUGGugucggucaguuCCUUGaaccgggcgcggauGAGGCCg -3'
miRNA:   3'- -CGG-GGCCGUCGCACC------------GGGAC--------------CUUCGG- -5'
26785 3' -63.1 NC_005808.1 + 13248 0.74 0.072325
Target:  5'- gGCCaCCGGC-GCGUGGUUCgaGGAcuuGGCCg -3'
miRNA:   3'- -CGG-GGCCGuCGCACCGGGa-CCU---UCGG- -5'
26785 3' -63.1 NC_005808.1 + 10457 0.74 0.07437
Target:  5'- cGCCCU--UGGCGUcGCCCUGGAAGUCg -3'
miRNA:   3'- -CGGGGccGUCGCAcCGGGACCUUCGG- -5'
26785 3' -63.1 NC_005808.1 + 31007 0.72 0.095436
Target:  5'- -gCCCGGCGGCcagccggcGGCCCUGGGcGGCa -3'
miRNA:   3'- cgGGGCCGUCGca------CCGGGACCU-UCGg -5'
26785 3' -63.1 NC_005808.1 + 13577 0.71 0.118794
Target:  5'- -aCCUGGCcgaAGCGcGGCgCCUGGucGCCu -3'
miRNA:   3'- cgGGGCCG---UCGCaCCG-GGACCuuCGG- -5'
26785 3' -63.1 NC_005808.1 + 31235 0.71 0.118794
Target:  5'- aCCCCGGC-GCGcGGCCCaGcuacGAGCCg -3'
miRNA:   3'- cGGGGCCGuCGCaCCGGGaCc---UUCGG- -5'
26785 3' -63.1 NC_005808.1 + 1534 0.7 0.143496
Target:  5'- cGCCCa-GCAGUucGGCCUUGGuaAAGCCg -3'
miRNA:   3'- -CGGGgcCGUCGcaCCGGGACC--UUCGG- -5'
26785 3' -63.1 NC_005808.1 + 41303 0.7 0.155045
Target:  5'- cGCCCugggcgCGGCGGUGUGGgcgggcaucaCCUcgaaacuUGGggGCCa -3'
miRNA:   3'- -CGGG------GCCGUCGCACC----------GGG-------ACCuuCGG- -5'
26785 3' -63.1 NC_005808.1 + 1952 0.69 0.161344
Target:  5'- gGUUCUGGUcgAGCGcgcGGCCCUGGGggaaggcacgcuguaGGCCg -3'
miRNA:   3'- -CGGGGCCG--UCGCa--CCGGGACCU---------------UCGG- -5'
26785 3' -63.1 NC_005808.1 + 25140 0.69 0.162632
Target:  5'- gGCCCUGGC---GUGGCaCCUGGccucgaugcuggcgGGGCCa -3'
miRNA:   3'- -CGGGGCCGucgCACCG-GGACC--------------UUCGG- -5'
26785 3' -63.1 NC_005808.1 + 682 0.68 0.186939
Target:  5'- cGCCUaCGGCGGCGccGGCCg-GGccGCCc -3'
miRNA:   3'- -CGGG-GCCGUCGCa-CCGGgaCCuuCGG- -5'
26785 3' -63.1 NC_005808.1 + 18367 0.68 0.188897
Target:  5'- uUgCCGGCGGCGagguUGGCCUugccgauggcgccggUGGcGGCCa -3'
miRNA:   3'- cGgGGCCGUCGC----ACCGGG---------------ACCuUCGG- -5'
26785 3' -63.1 NC_005808.1 + 17918 0.68 0.191869
Target:  5'- aGCCUgGGCguGGaCGUGGCCCgcggcGGgcGCg -3'
miRNA:   3'- -CGGGgCCG--UC-GCACCGGGa----CCuuCGg -5'
26785 3' -63.1 NC_005808.1 + 12468 0.68 0.191869
Target:  5'- uGCaggCCGGCGGCGU-GUUCUGGcgcGGCCu -3'
miRNA:   3'- -CGg--GGCCGUCGCAcCGGGACCu--UCGG- -5'
26785 3' -63.1 NC_005808.1 + 19013 0.68 0.196914
Target:  5'- uGUCCCacuuguaguGGguGCGguaGCCCUGGuagcGGCCg -3'
miRNA:   3'- -CGGGG---------CCguCGCac-CGGGACCu---UCGG- -5'
26785 3' -63.1 NC_005808.1 + 42410 0.68 0.202074
Target:  5'- -gCCCGGCAGCGUGacgguGCCCagcgacaccgGGgcGCa -3'
miRNA:   3'- cgGGGCCGUCGCAC-----CGGGa---------CCuuCGg -5'
26785 3' -63.1 NC_005808.1 + 8166 0.68 0.202075
Target:  5'- cGUCCCuGC-GCGUGcGCCC-GGAugcuGCCg -3'
miRNA:   3'- -CGGGGcCGuCGCAC-CGGGaCCUu---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.