Results 21 - 40 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 682 | 0.68 | 0.186939 |
Target: 5'- cGCCUaCGGCGGCGccGGCCg-GGccGCCc -3' miRNA: 3'- -CGGG-GCCGUCGCa-CCGGgaCCuuCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 18367 | 0.68 | 0.188897 |
Target: 5'- uUgCCGGCGGCGagguUGGCCUugccgauggcgccggUGGcGGCCa -3' miRNA: 3'- cGgGGCCGUCGC----ACCGGG---------------ACCuUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 19013 | 0.68 | 0.196914 |
Target: 5'- uGUCCCacuuguaguGGguGCGguaGCCCUGGuagcGGCCg -3' miRNA: 3'- -CGGGG---------CCguCGCac-CGGGACCu---UCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 8166 | 0.68 | 0.202075 |
Target: 5'- cGUCCCuGC-GCGUGcGCCC-GGAugcuGCCg -3' miRNA: 3'- -CGGGGcCGuCGCAC-CGGGaCCUu---CGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 26536 | 0.68 | 0.21494 |
Target: 5'- cGCCgCGcGCGGCGgccacgugcgcgaacUGGCCuacaaCUGGcAGGCCa -3' miRNA: 3'- -CGGgGC-CGUCGC---------------ACCGG-----GACC-UUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 20672 | 0.67 | 0.220504 |
Target: 5'- gGCCuuGGuCGGCgGUGacaucuacggcaacaGCCCcgcaaUGGAAGCCu -3' miRNA: 3'- -CGGggCC-GUCG-CAC---------------CGGG-----ACCUUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 4044 | 0.67 | 0.235549 |
Target: 5'- gGCCgCGGCgAGCGgcaggccagcGGCCCaggggggauUGGuAGCCa -3' miRNA: 3'- -CGGgGCCG-UCGCa---------CCGGG---------ACCuUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 8861 | 0.67 | 0.235549 |
Target: 5'- aGCCCaggacggugCGGUAGCGUucGGCCUUGGc-GUCc -3' miRNA: 3'- -CGGG---------GCCGUCGCA--CCGGGACCuuCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 6339 | 0.67 | 0.241561 |
Target: 5'- cGCCCCaGCcaaAGCGcccGGCCCga-AGGCCg -3' miRNA: 3'- -CGGGGcCG---UCGCa--CCGGGaccUUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 10241 | 0.66 | 0.260365 |
Target: 5'- gGCCUCGGCGGCGaccGCagcgaCCUGGGcGGCg -3' miRNA: 3'- -CGGGGCCGUCGCac-CG-----GGACCU-UCGg -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 7627 | 0.66 | 0.266894 |
Target: 5'- aGCgCCGGaCA-CGUGGCCUUGGccuuGCa -3' miRNA: 3'- -CGgGGCC-GUcGCACCGGGACCuu--CGg -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 42410 | 0.68 | 0.202074 |
Target: 5'- -gCCCGGCAGCGUGacgguGCCCagcgacaccgGGgcGCa -3' miRNA: 3'- cgGGGCCGUCGCAC-----CGGGa---------CCuuCGg -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 12468 | 0.68 | 0.191869 |
Target: 5'- uGCaggCCGGCGGCGU-GUUCUGGcgcGGCCu -3' miRNA: 3'- -CGg--GGCCGUCGCAcCGGGACCu--UCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 17918 | 0.68 | 0.191869 |
Target: 5'- aGCCUgGGCguGGaCGUGGCCCgcggcGGgcGCg -3' miRNA: 3'- -CGGGgCCG--UC-GCACCGGGa----CCuuCGg -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 25140 | 0.69 | 0.162632 |
Target: 5'- gGCCCUGGC---GUGGCaCCUGGccucgaugcuggcgGGGCCa -3' miRNA: 3'- -CGGGGCCGucgCACCG-GGACC--------------UUCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 1952 | 0.69 | 0.161344 |
Target: 5'- gGUUCUGGUcgAGCGcgcGGCCCUGGGggaaggcacgcuguaGGCCg -3' miRNA: 3'- -CGGGGCCG--UCGCa--CCGGGACCU---------------UCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 41303 | 0.7 | 0.155045 |
Target: 5'- cGCCCugggcgCGGCGGUGUGGgcgggcaucaCCUcgaaacuUGGggGCCa -3' miRNA: 3'- -CGGG------GCCGUCGCACC----------GGG-------ACCuuCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 13577 | 0.71 | 0.118794 |
Target: 5'- -aCCUGGCcgaAGCGcGGCgCCUGGucGCCu -3' miRNA: 3'- cgGGGCCG---UCGCaCCG-GGACCuuCGG- -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 31007 | 0.72 | 0.095436 |
Target: 5'- -gCCCGGCGGCcagccggcGGCCCUGGGcGGCa -3' miRNA: 3'- cgGGGCCGUCGca------CCGGGACCU-UCGg -5' |
|||||||
26785 | 3' | -63.1 | NC_005808.1 | + | 37972 | 0.66 | 0.287272 |
Target: 5'- aCCCugCGGCAGCGcgGGCCaacauUGGccuGGCUg -3' miRNA: 3'- cGGG--GCCGUCGCa-CCGGg----ACCu--UCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home