miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26787 3' -59.5 NC_005808.1 + 24442 0.66 0.441372
Target:  5'- gCCGCgCGCggccucGGCGAcauUGACGCCGAc -3'
miRNA:   3'- gGGCG-GCGac----CUGCUu--GCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 24675 0.66 0.460534
Target:  5'- gCCCGCCGC-GGGCc-ACGuccACGCCcAGg -3'
miRNA:   3'- -GGGCGGCGaCCUGcuUGC---UGCGGcUC- -5'
26787 3' -59.5 NC_005808.1 + 25662 0.7 0.266918
Target:  5'- -aCGCUGCUGGACGGcgccgugcccuACGAaaucgccaaucccuaCGCCGAa -3'
miRNA:   3'- ggGCGGCGACCUGCU-----------UGCU---------------GCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 25761 0.69 0.298817
Target:  5'- gCgCGCUGCUGGGCGGcggcaACGAUgGCCGcGa -3'
miRNA:   3'- -GgGCGGCGACCUGCU-----UGCUG-CGGCuC- -5'
26787 3' -59.5 NC_005808.1 + 26389 0.67 0.422669
Target:  5'- gCUGCUGCUcacgucuucGGGCGAAUGGCGCgUGGc -3'
miRNA:   3'- gGGCGGCGA---------CCUGCUUGCUGCG-GCUc -5'
26787 3' -59.5 NC_005808.1 + 27761 0.72 0.20873
Target:  5'- gCUgGCCGCcaacggcaucgaccUGGGCGAaggcaGCGcCGCCGAGg -3'
miRNA:   3'- -GGgCGGCG--------------ACCUGCU-----UGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 28056 0.66 0.47028
Target:  5'- uCUCGUCGCUGuuguccggcgccGGCG-ACGugGCUGAu -3'
miRNA:   3'- -GGGCGGCGAC------------CUGCuUGCugCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 28281 0.67 0.413498
Target:  5'- aCCGCgCGCUGGGac-ACGGCGCaGAa -3'
miRNA:   3'- gGGCG-GCGACCUgcuUGCUGCGgCUc -5'
26787 3' -59.5 NC_005808.1 + 29176 0.74 0.144231
Target:  5'- gCCUGCCGUgGGACGAgaaccguuaccgcaACGAUGCCGc- -3'
miRNA:   3'- -GGGCGGCGaCCUGCU--------------UGCUGCGGCuc -5'
26787 3' -59.5 NC_005808.1 + 29958 0.74 0.134097
Target:  5'- aCCCGaCGCcaaaGGACGGcagcaGCGAUGCCGAGc -3'
miRNA:   3'- -GGGCgGCGa---CCUGCU-----UGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 30371 0.68 0.377213
Target:  5'- aCCCGCCGCUgcuguagGGugGGucggugauaACGGCGUCc-- -3'
miRNA:   3'- -GGGCGGCGA-------CCugCU---------UGCUGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 31316 0.68 0.361141
Target:  5'- uUCCGCCuacCUGGcCGAGCGucccaGCGCCGcAGc -3'
miRNA:   3'- -GGGCGGc--GACCuGCUUGC-----UGCGGC-UC- -5'
26787 3' -59.5 NC_005808.1 + 31958 0.68 0.336749
Target:  5'- -aCGCCGCaGG-UGAAUGACGCCu-- -3'
miRNA:   3'- ggGCGGCGaCCuGCUUGCUGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 32058 0.69 0.291639
Target:  5'- aCCCGuuGCgcgugGcGGCGGaaaGCGugGCCGGc -3'
miRNA:   3'- -GGGCggCGa----C-CUGCU---UGCugCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 32128 0.66 0.460534
Target:  5'- gCCGgUGCUGcGCGAcuuccaggGCGACGCCaAGg -3'
miRNA:   3'- gGGCgGCGACcUGCU--------UGCUGCGGcUC- -5'
26787 3' -59.5 NC_005808.1 + 32346 0.7 0.264278
Target:  5'- aCCGCCGCccaGGucgcuGCGGuCGcCGCCGAGg -3'
miRNA:   3'- gGGCGGCGa--CC-----UGCUuGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 32855 0.74 0.134097
Target:  5'- cCUgGCCGCa-GACGGuCGGCGCCGAGa -3'
miRNA:   3'- -GGgCGGCGacCUGCUuGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 33277 0.74 0.134097
Target:  5'- gCCCGCCGCgccGACGuGCGccgccagguCGCCGAGg -3'
miRNA:   3'- -GGGCGGCGac-CUGCuUGCu--------GCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 33372 0.67 0.390238
Target:  5'- aCUGCCGCcGGGCGcgccgcagaacgugcGccGCGcCGCCGAGc -3'
miRNA:   3'- gGGCGGCGaCCUGC---------------U--UGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 34666 0.66 0.441372
Target:  5'- gCCGUgGCgugaaGGugGACGCCGAGc -3'
miRNA:   3'- gGGCGgCGaccugCUugCUGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.