miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26787 3' -59.5 NC_005808.1 + 14377 0.68 0.344744
Target:  5'- aCCCG-CGCgUGGuCGucgGCGugGCCGAc -3'
miRNA:   3'- -GGGCgGCG-ACCuGCu--UGCugCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 14417 0.69 0.30613
Target:  5'- gCCGCaccuGCUGGGCGugggcaacGGCGugGUCGAu -3'
miRNA:   3'- gGGCGg---CGACCUGC--------UUGCugCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 14556 0.7 0.270917
Target:  5'- aCCGUCGCc-GACGuguucuucGGCGACGCCGAc -3'
miRNA:   3'- gGGCGGCGacCUGC--------UUGCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 14706 0.72 0.194603
Target:  5'- aUCCGCgacgUGCUGGGCGAGC-ACGCCaAGa -3'
miRNA:   3'- -GGGCG----GCGACCUGCUUGcUGCGGcUC- -5'
26787 3' -59.5 NC_005808.1 + 15916 0.68 0.364485
Target:  5'- gCCGCUGCUGcuGAUGAaccacacgauaggcuGCGGCGCCu-- -3'
miRNA:   3'- gGGCGGCGAC--CUGCU---------------UGCUGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 16561 0.73 0.16618
Target:  5'- gCCCGCCGCgcGGGCuuuGAUGccauCGCCGAGg -3'
miRNA:   3'- -GGGCGGCGa-CCUGc--UUGCu---GCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 16893 0.71 0.215842
Target:  5'- cCCCGCCGCgGGGCuGGuaugagcaGCGuuGCCGAa -3'
miRNA:   3'- -GGGCGGCGaCCUG-CU--------UGCugCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 16929 0.72 0.189587
Target:  5'- aUCCGCCgGCUGauGACGuacAUGACGCCGGc -3'
miRNA:   3'- -GGGCGG-CGAC--CUGCu--UGCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 16977 0.7 0.257771
Target:  5'- aCgCGCUGCUGG-CGAccGCGcCGCCGuGg -3'
miRNA:   3'- -GgGCGGCGACCuGCU--UGCuGCGGCuC- -5'
26787 3' -59.5 NC_005808.1 + 17433 0.67 0.431961
Target:  5'- aCCCGCCGacc-ACGAGCGAgGgCCGGu -3'
miRNA:   3'- -GGGCGGCgaccUGCUUGCUgC-GGCUc -5'
26787 3' -59.5 NC_005808.1 + 17478 0.72 0.183236
Target:  5'- cCCCGUgGCUGGACaagaagcacccgcuGuaucccACGGCGCCGGGc -3'
miRNA:   3'- -GGGCGgCGACCUG--------------Cu-----UGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 17612 0.68 0.344744
Target:  5'- gCCC-CCuuuguGCUGGugGGugGGCGCguCGAGu -3'
miRNA:   3'- -GGGcGG-----CGACCugCUugCUGCG--GCUC- -5'
26787 3' -59.5 NC_005808.1 + 17893 0.67 0.413498
Target:  5'- gCCCGaCCGaCUGGcacCGAugGACaGCCuGGGc -3'
miRNA:   3'- -GGGC-GGC-GACCu--GCUugCUG-CGG-CUC- -5'
26787 3' -59.5 NC_005808.1 + 18432 0.67 0.404451
Target:  5'- gUCCGCCGagucCUGcaccgaaaacguGACGGucGCGGCGCCGGc -3'
miRNA:   3'- -GGGCGGC----GAC------------CUGCU--UGCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 19491 0.67 0.431961
Target:  5'- aCCGCUGUcgccgUGGGCGccgccguUGGCGUCGGGg -3'
miRNA:   3'- gGGCGGCG-----ACCUGCuu-----GCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 21159 0.67 0.404451
Target:  5'- cCCCGCCGCaGGAaaugcaGGGCGuugaccugaACGUgGAGu -3'
miRNA:   3'- -GGGCGGCGaCCUg-----CUUGC---------UGCGgCUC- -5'
26787 3' -59.5 NC_005808.1 + 21317 0.72 0.199735
Target:  5'- gCCGaCCGCUGGGCcGACacuuACGCCGAc -3'
miRNA:   3'- gGGC-GGCGACCUGcUUGc---UGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 21999 0.68 0.344744
Target:  5'- -aCGCCGcCUGG-CGAAgGAUaCCGAGg -3'
miRNA:   3'- ggGCGGC-GACCuGCUUgCUGcGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 22320 0.72 0.199735
Target:  5'- -aUGCUGCUGGccgugcCGAACG-CGCCGAGu -3'
miRNA:   3'- ggGCGGCGACCu-----GCUUGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 23321 0.68 0.336749
Target:  5'- aCCaCGCUGUUcuacGGCGAuuccagcauCGACGCCGAGa -3'
miRNA:   3'- -GG-GCGGCGAc---CUGCUu--------GCUGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.