miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26787 3' -59.5 NC_005808.1 + 16977 0.7 0.257771
Target:  5'- aCgCGCUGCUGG-CGAccGCGcCGCCGuGg -3'
miRNA:   3'- -GgGCGGCGACCuGCU--UGCuGCGGCuC- -5'
26787 3' -59.5 NC_005808.1 + 32346 0.7 0.264278
Target:  5'- aCCGCCGCccaGGucgcuGCGGuCGcCGCCGAGg -3'
miRNA:   3'- gGGCGGCGa--CC-----UGCUuGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 25662 0.7 0.266918
Target:  5'- -aCGCUGCUGGACGGcgccgugcccuACGAaaucgccaaucccuaCGCCGAa -3'
miRNA:   3'- ggGCGGCGACCUGCU-----------UGCU---------------GCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 13858 0.7 0.269579
Target:  5'- aCCG-CGCUGGACGAugccaagGCGcucauccucgcguGCGCCGAc -3'
miRNA:   3'- gGGCgGCGACCUGCU-------UGC-------------UGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 14556 0.7 0.270917
Target:  5'- aCCGUCGCc-GACGuguucuucGGCGACGCCGAc -3'
miRNA:   3'- gGGCGGCGacCUGC--------UUGCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 14250 0.7 0.27361
Target:  5'- aUCCGCgCGCUGcccGACGAggccaaggccaucgaGucCGACGCCGAGc -3'
miRNA:   3'- -GGGCG-GCGAC---CUGCU---------------U--GCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 14060 0.7 0.284597
Target:  5'- gCCCGgCGCUGGGCGu-CGuuGCCuAGg -3'
miRNA:   3'- -GGGCgGCGACCUGCuuGCugCGGcUC- -5'
26787 3' -59.5 NC_005808.1 + 41120 0.7 0.284597
Target:  5'- gCCgGUgGC-GGAagaaGAACGGCGUCGAGg -3'
miRNA:   3'- -GGgCGgCGaCCUg---CUUGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 32058 0.69 0.291639
Target:  5'- aCCCGuuGCgcgugGcGGCGGaaaGCGugGCCGGc -3'
miRNA:   3'- -GGGCggCGa----C-CUGCU---UGCugCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 25761 0.69 0.298817
Target:  5'- gCgCGCUGCUGGGCGGcggcaACGAUgGCCGcGa -3'
miRNA:   3'- -GgGCGGCGACCUGCU-----UGCUG-CGGCuC- -5'
26787 3' -59.5 NC_005808.1 + 14417 0.69 0.30613
Target:  5'- gCCGCaccuGCUGGGCGugggcaacGGCGugGUCGAu -3'
miRNA:   3'- gGGCGg---CGACCUGC--------UUGCugCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 40291 0.69 0.31358
Target:  5'- gCCUGUCGCUGGACGcccGCGACuauuUCGAc -3'
miRNA:   3'- -GGGCGGCGACCUGCu--UGCUGc---GGCUc -5'
26787 3' -59.5 NC_005808.1 + 2745 0.69 0.321167
Target:  5'- gCCCGgCGCUGcuCGGGCG-UGCCGAc -3'
miRNA:   3'- -GGGCgGCGACcuGCUUGCuGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 11841 0.69 0.32889
Target:  5'- gCCgCGCCGCgguuggccUGGGCGAACcccGCGCCa-- -3'
miRNA:   3'- -GG-GCGGCG--------ACCUGCUUGc--UGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 23321 0.68 0.336749
Target:  5'- aCCaCGCUGUUcuacGGCGAuuccagcauCGACGCCGAGa -3'
miRNA:   3'- -GG-GCGGCGAc---CUGCUu--------GCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 31958 0.68 0.336749
Target:  5'- -aCGCCGCaGG-UGAAUGACGCCu-- -3'
miRNA:   3'- ggGCGGCGaCCuGCUUGCUGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 38897 0.68 0.344744
Target:  5'- -gCGCCGCaugGGGCaGcGCGuCGCCGGGu -3'
miRNA:   3'- ggGCGGCGa--CCUG-CuUGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 14377 0.68 0.344744
Target:  5'- aCCCG-CGCgUGGuCGucgGCGugGCCGAc -3'
miRNA:   3'- -GGGCgGCG-ACCuGCu--UGCugCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 11361 0.68 0.344744
Target:  5'- gCUCGuaGCUGGGCc-GCG-CGCCGGGg -3'
miRNA:   3'- -GGGCggCGACCUGcuUGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 17612 0.68 0.344744
Target:  5'- gCCC-CCuuuguGCUGGugGGugGGCGCguCGAGu -3'
miRNA:   3'- -GGGcGG-----CGACCugCUugCUGCG--GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.