miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26787 3' -59.5 NC_005808.1 + 35197 0.67 0.413498
Target:  5'- gCCCgGCUucaaGCUGGugGAAgGuCGCCGcGg -3'
miRNA:   3'- -GGG-CGG----CGACCugCUUgCuGCGGCuC- -5'
26787 3' -59.5 NC_005808.1 + 17893 0.67 0.413498
Target:  5'- gCCCGaCCGaCUGGcacCGAugGACaGCCuGGGc -3'
miRNA:   3'- -GGGC-GGC-GACCu--GCUugCUG-CGG-CUC- -5'
26787 3' -59.5 NC_005808.1 + 18432 0.67 0.404451
Target:  5'- gUCCGCCGagucCUGcaccgaaaacguGACGGucGCGGCGCCGGc -3'
miRNA:   3'- -GGGCGGC----GAC------------CUGCU--UGCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 13727 0.67 0.404451
Target:  5'- -aCGCCaGCagcgaGGACGuggcGCGGCGCUGGGa -3'
miRNA:   3'- ggGCGG-CGa----CCUGCu---UGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 21159 0.67 0.404451
Target:  5'- cCCCGCCGCaGGAaaugcaGGGCGuugaccugaACGUgGAGu -3'
miRNA:   3'- -GGGCGGCGaCCUg-----CUUGC---------UGCGgCUC- -5'
26787 3' -59.5 NC_005808.1 + 13560 0.67 0.395529
Target:  5'- gCCGCCGgUGGGuauCGAccuggccgaagcGCGGCGCCuGGu -3'
miRNA:   3'- gGGCGGCgACCU---GCU------------UGCUGCGGcUC- -5'
26787 3' -59.5 NC_005808.1 + 33372 0.67 0.390238
Target:  5'- aCUGCCGCcGGGCGcgccgcagaacgugcGccGCGcCGCCGAGc -3'
miRNA:   3'- gGGCGGCGaCCUGC---------------U--UGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 10549 0.67 0.386736
Target:  5'- gUCGCauaGUUGuGCGAGCG-CGCCGGGu -3'
miRNA:   3'- gGGCGg--CGACcUGCUUGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 30371 0.68 0.377213
Target:  5'- aCCCGCCGCUgcuguagGGugGGucggugauaACGGCGUCc-- -3'
miRNA:   3'- -GGGCGGCGA-------CCugCU---------UGCUGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 15916 0.68 0.364485
Target:  5'- gCCGCUGCUGcuGAUGAaccacacgauaggcuGCGGCGCCu-- -3'
miRNA:   3'- gGGCGGCGAC--CUGCU---------------UGCUGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 31316 0.68 0.361141
Target:  5'- uUCCGCCuacCUGGcCGAGCGucccaGCGCCGcAGc -3'
miRNA:   3'- -GGGCGGc--GACCuGCUUGC-----UGCGGC-UC- -5'
26787 3' -59.5 NC_005808.1 + 21999 0.68 0.344744
Target:  5'- -aCGCCGcCUGG-CGAAgGAUaCCGAGg -3'
miRNA:   3'- ggGCGGC-GACCuGCUUgCUGcGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 17612 0.68 0.344744
Target:  5'- gCCC-CCuuuguGCUGGugGGugGGCGCguCGAGu -3'
miRNA:   3'- -GGGcGG-----CGACCugCUugCUGCG--GCUC- -5'
26787 3' -59.5 NC_005808.1 + 11361 0.68 0.344744
Target:  5'- gCUCGuaGCUGGGCc-GCG-CGCCGGGg -3'
miRNA:   3'- -GGGCggCGACCUGcuUGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 14377 0.68 0.344744
Target:  5'- aCCCG-CGCgUGGuCGucgGCGugGCCGAc -3'
miRNA:   3'- -GGGCgGCG-ACCuGCu--UGCugCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 38897 0.68 0.344744
Target:  5'- -gCGCCGCaugGGGCaGcGCGuCGCCGGGu -3'
miRNA:   3'- ggGCGGCGa--CCUG-CuUGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 23321 0.68 0.336749
Target:  5'- aCCaCGCUGUUcuacGGCGAuuccagcauCGACGCCGAGa -3'
miRNA:   3'- -GG-GCGGCGAc---CUGCUu--------GCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 31958 0.68 0.336749
Target:  5'- -aCGCCGCaGG-UGAAUGACGCCu-- -3'
miRNA:   3'- ggGCGGCGaCCuGCUUGCUGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 11841 0.69 0.32889
Target:  5'- gCCgCGCCGCgguuggccUGGGCGAACcccGCGCCa-- -3'
miRNA:   3'- -GG-GCGGCG--------ACCUGCUUGc--UGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 2745 0.69 0.321167
Target:  5'- gCCCGgCGCUGcuCGGGCG-UGCCGAc -3'
miRNA:   3'- -GGGCgGCGACcuGCUUGCuGCGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.