Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 40291 | 0.69 | 0.31358 |
Target: 5'- gCCUGUCGCUGGACGcccGCGACuauuUCGAc -3' miRNA: 3'- -GGGCGGCGACCUGCu--UGCUGc---GGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 14417 | 0.69 | 0.30613 |
Target: 5'- gCCGCaccuGCUGGGCGugggcaacGGCGugGUCGAu -3' miRNA: 3'- gGGCGg---CGACCUGC--------UUGCugCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 25761 | 0.69 | 0.298817 |
Target: 5'- gCgCGCUGCUGGGCGGcggcaACGAUgGCCGcGa -3' miRNA: 3'- -GgGCGGCGACCUGCU-----UGCUG-CGGCuC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 32058 | 0.69 | 0.291639 |
Target: 5'- aCCCGuuGCgcgugGcGGCGGaaaGCGugGCCGGc -3' miRNA: 3'- -GGGCggCGa----C-CUGCU---UGCugCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 41120 | 0.7 | 0.284597 |
Target: 5'- gCCgGUgGC-GGAagaaGAACGGCGUCGAGg -3' miRNA: 3'- -GGgCGgCGaCCUg---CUUGCUGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 14060 | 0.7 | 0.284597 |
Target: 5'- gCCCGgCGCUGGGCGu-CGuuGCCuAGg -3' miRNA: 3'- -GGGCgGCGACCUGCuuGCugCGGcUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 14250 | 0.7 | 0.27361 |
Target: 5'- aUCCGCgCGCUGcccGACGAggccaaggccaucgaGucCGACGCCGAGc -3' miRNA: 3'- -GGGCG-GCGAC---CUGCU---------------U--GCUGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 14556 | 0.7 | 0.270917 |
Target: 5'- aCCGUCGCc-GACGuguucuucGGCGACGCCGAc -3' miRNA: 3'- gGGCGGCGacCUGC--------UUGCUGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 13858 | 0.7 | 0.269579 |
Target: 5'- aCCG-CGCUGGACGAugccaagGCGcucauccucgcguGCGCCGAc -3' miRNA: 3'- gGGCgGCGACCUGCU-------UGC-------------UGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 25662 | 0.7 | 0.266918 |
Target: 5'- -aCGCUGCUGGACGGcgccgugcccuACGAaaucgccaaucccuaCGCCGAa -3' miRNA: 3'- ggGCGGCGACCUGCU-----------UGCU---------------GCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 32346 | 0.7 | 0.264278 |
Target: 5'- aCCGCCGCccaGGucgcuGCGGuCGcCGCCGAGg -3' miRNA: 3'- gGGCGGCGa--CC-----UGCUuGCuGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 16977 | 0.7 | 0.257771 |
Target: 5'- aCgCGCUGCUGG-CGAccGCGcCGCCGuGg -3' miRNA: 3'- -GgGCGGCGACCuGCU--UGCuGCGGCuC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 40530 | 0.71 | 0.245152 |
Target: 5'- aUCGUggUGCUGGGCG-ACGACcCCGAGg -3' miRNA: 3'- gGGCG--GCGACCUGCuUGCUGcGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 1302 | 0.71 | 0.233049 |
Target: 5'- aCCGCCGCgcccaGGGCGA-CGGCcaccagGCCGAc -3' miRNA: 3'- gGGCGGCGa----CCUGCUuGCUG------CGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 16893 | 0.71 | 0.215842 |
Target: 5'- cCCCGCCGCgGGGCuGGuaugagcaGCGuuGCCGAa -3' miRNA: 3'- -GGGCGGCGaCCUG-CU--------UGCugCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 27761 | 0.72 | 0.20873 |
Target: 5'- gCUgGCCGCcaacggcaucgaccUGGGCGAaggcaGCGcCGCCGAGg -3' miRNA: 3'- -GGgCGGCG--------------ACCUGCU-----UGCuGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 36861 | 0.72 | 0.204984 |
Target: 5'- gCCCgGCgCGCUGGGCGAucuguGCGACauccucaagguGCCGAc -3' miRNA: 3'- -GGG-CG-GCGACCUGCU-----UGCUG-----------CGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 3335 | 0.72 | 0.204984 |
Target: 5'- gCUGUCGCUGGugGAAUGcgucACGCCa-- -3' miRNA: 3'- gGGCGGCGACCugCUUGC----UGCGGcuc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 21317 | 0.72 | 0.199735 |
Target: 5'- gCCGaCCGCUGGGCcGACacuuACGCCGAc -3' miRNA: 3'- gGGC-GGCGACCUGcUUGc---UGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 22320 | 0.72 | 0.199735 |
Target: 5'- -aUGCUGCUGGccgugcCGAACG-CGCCGAGu -3' miRNA: 3'- ggGCGGCGACCu-----GCUUGCuGCGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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