miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26787 3' -59.5 NC_005808.1 + 36861 0.72 0.204984
Target:  5'- gCCCgGCgCGCUGGGCGAucuguGCGACauccucaagguGCCGAc -3'
miRNA:   3'- -GGG-CG-GCGACCUGCU-----UGCUG-----------CGGCUc -5'
26787 3' -59.5 NC_005808.1 + 1302 0.71 0.233049
Target:  5'- aCCGCCGCgcccaGGGCGA-CGGCcaccagGCCGAc -3'
miRNA:   3'- gGGCGGCGa----CCUGCUuGCUG------CGGCUc -5'
26787 3' -59.5 NC_005808.1 + 32346 0.7 0.264278
Target:  5'- aCCGCCGCccaGGucgcuGCGGuCGcCGCCGAGg -3'
miRNA:   3'- gGGCGGCGa--CC-----UGCUuGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 41120 0.7 0.284597
Target:  5'- gCCgGUgGC-GGAagaaGAACGGCGUCGAGg -3'
miRNA:   3'- -GGgCGgCGaCCUg---CUUGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 38897 0.68 0.344744
Target:  5'- -gCGCCGCaugGGGCaGcGCGuCGCCGGGu -3'
miRNA:   3'- ggGCGGCGa--CCUG-CuUGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 11841 0.69 0.32889
Target:  5'- gCCgCGCCGCgguuggccUGGGCGAACcccGCGCCa-- -3'
miRNA:   3'- -GG-GCGGCG--------ACCUGCUUGc--UGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 40291 0.69 0.31358
Target:  5'- gCCUGUCGCUGGACGcccGCGACuauuUCGAc -3'
miRNA:   3'- -GGGCGGCGACCUGCu--UGCUGc---GGCUc -5'
26787 3' -59.5 NC_005808.1 + 25761 0.69 0.298817
Target:  5'- gCgCGCUGCUGGGCGGcggcaACGAUgGCCGcGa -3'
miRNA:   3'- -GgGCGGCGACCUGCU-----UGCUG-CGGCuC- -5'
26787 3' -59.5 NC_005808.1 + 14060 0.7 0.284597
Target:  5'- gCCCGgCGCUGGGCGu-CGuuGCCuAGg -3'
miRNA:   3'- -GGGCgGCGACCUGCuuGCugCGGcUC- -5'
26787 3' -59.5 NC_005808.1 + 3335 0.72 0.204984
Target:  5'- gCUGUCGCUGGugGAAUGcgucACGCCa-- -3'
miRNA:   3'- gGGCGGCGACCugCUUGC----UGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 21317 0.72 0.199735
Target:  5'- gCCGaCCGCUGGGCcGACacuuACGCCGAc -3'
miRNA:   3'- gGGC-GGCGACCUGcUUGc---UGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 14706 0.72 0.194603
Target:  5'- aUCCGCgacgUGCUGGGCGAGC-ACGCCaAGa -3'
miRNA:   3'- -GGGCG----GCGACCUGCUUGcUGCGGcUC- -5'
26787 3' -59.5 NC_005808.1 + 16929 0.72 0.189587
Target:  5'- aUCCGCCgGCUGauGACGuacAUGACGCCGGc -3'
miRNA:   3'- -GGGCGG-CGAC--CUGCu--UGCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 17478 0.72 0.183236
Target:  5'- cCCCGUgGCUGGACaagaagcacccgcuGuaucccACGGCGCCGGGc -3'
miRNA:   3'- -GGGCGgCGACCUG--------------Cu-----UGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 34805 0.73 0.174753
Target:  5'- -gCGCCuGCUGGGCGgcgaaggGugGACGCCGGc -3'
miRNA:   3'- ggGCGG-CGACCUGC-------UugCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 16561 0.73 0.16618
Target:  5'- gCCCGCCGCgcGGGCuuuGAUGccauCGCCGAGg -3'
miRNA:   3'- -GGGCGGCGa-CCUGc--UUGCu---GCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 29176 0.74 0.144231
Target:  5'- gCCUGCCGUgGGACGAgaaccguuaccgcaACGAUGCCGc- -3'
miRNA:   3'- -GGGCGGCGaCCUGCU--------------UGCUGCGGCuc -5'
26787 3' -59.5 NC_005808.1 + 33277 0.74 0.134097
Target:  5'- gCCCGCCGCgccGACGuGCGccgccagguCGCCGAGg -3'
miRNA:   3'- -GGGCGGCGac-CUGCuUGCu--------GCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 29958 0.74 0.134097
Target:  5'- aCCCGaCGCcaaaGGACGGcagcaGCGAUGCCGAGc -3'
miRNA:   3'- -GGGCgGCGa---CCUGCU-----UGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 4041 0.66 0.480129
Target:  5'- gCCgGCCGC-GG-CGAGCGGCagGCCa-- -3'
miRNA:   3'- -GGgCGGCGaCCuGCUUGCUG--CGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.