Results 1 - 20 of 72 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 11233 | 0.67 | 0.429161 |
Target: 5'- uCCCGCCcacgcccacuaGCgUGG-CGAugaggguuugcgcuGCGGCGCUGGGa -3' miRNA: 3'- -GGGCGG-----------CG-ACCuGCU--------------UGCUGCGGCUC- -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 38897 | 0.68 | 0.344744 |
Target: 5'- -gCGCCGCaugGGGCaGcGCGuCGCCGGGu -3' miRNA: 3'- ggGCGGCGa--CCUG-CuUGCuGCGGCUC- -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 15916 | 0.68 | 0.364485 |
Target: 5'- gCCGCUGCUGcuGAUGAaccacacgauaggcuGCGGCGCCu-- -3' miRNA: 3'- gGGCGGCGAC--CUGCU---------------UGCUGCGGcuc -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 30371 | 0.68 | 0.377213 |
Target: 5'- aCCCGCCGCUgcuguagGGugGGucggugauaACGGCGUCc-- -3' miRNA: 3'- -GGGCGGCGA-------CCugCU---------UGCUGCGGcuc -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 18432 | 0.67 | 0.404451 |
Target: 5'- gUCCGCCGagucCUGcaccgaaaacguGACGGucGCGGCGCCGGc -3' miRNA: 3'- -GGGCGGC----GAC------------CUGCU--UGCUGCGGCUc -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 35197 | 0.67 | 0.413498 |
Target: 5'- gCCCgGCUucaaGCUGGugGAAgGuCGCCGcGg -3' miRNA: 3'- -GGG-CGG----CGACCugCUUgCuGCGGCuC- -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 8994 | 0.67 | 0.413498 |
Target: 5'- cCUCGCCGCgcggGGGCGcuuccagcaGGCGGCGCa--- -3' miRNA: 3'- -GGGCGGCGa---CCUGC---------UUGCUGCGgcuc -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 28281 | 0.67 | 0.413498 |
Target: 5'- aCCGCgCGCUGGGac-ACGGCGCaGAa -3' miRNA: 3'- gGGCG-GCGACCUgcuUGCUGCGgCUc -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 4035 | 0.67 | 0.413498 |
Target: 5'- -aUGCCGCgcgGGuCGAGCG-CaGCCGGGc -3' miRNA: 3'- ggGCGGCGa--CCuGCUUGCuG-CGGCUC- -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 11841 | 0.69 | 0.32889 |
Target: 5'- gCCgCGCCGCgguuggccUGGGCGAACcccGCGCCa-- -3' miRNA: 3'- -GG-GCGGCG--------ACCUGCUUGc--UGCGGcuc -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 40291 | 0.69 | 0.31358 |
Target: 5'- gCCUGUCGCUGGACGcccGCGACuauuUCGAc -3' miRNA: 3'- -GGGCGGCGACCUGCu--UGCUGc---GGCUc -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 25761 | 0.69 | 0.298817 |
Target: 5'- gCgCGCUGCUGGGCGGcggcaACGAUgGCCGcGa -3' miRNA: 3'- -GgGCGGCGACCUGCU-----UGCUG-CGGCuC- -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 3762 | 0.78 | 0.077289 |
Target: 5'- gCCGCCGCUGGACGuagccuCGGucgUGCCGAa -3' miRNA: 3'- gGGCGGCGACCUGCuu----GCU---GCGGCUc -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 32855 | 0.74 | 0.134097 |
Target: 5'- cCUgGCCGCa-GACGGuCGGCGCCGAGa -3' miRNA: 3'- -GGgCGGCGacCUGCUuGCUGCGGCUC- -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 22320 | 0.72 | 0.199735 |
Target: 5'- -aUGCUGCUGGccgugcCGAACG-CGCCGAGu -3' miRNA: 3'- ggGCGGCGACCu-----GCUUGCuGCGGCUC- -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 36861 | 0.72 | 0.204984 |
Target: 5'- gCCCgGCgCGCUGGGCGAucuguGCGACauccucaagguGCCGAc -3' miRNA: 3'- -GGG-CG-GCGACCUGCU-----UGCUG-----------CGGCUc -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 1302 | 0.71 | 0.233049 |
Target: 5'- aCCGCCGCgcccaGGGCGA-CGGCcaccagGCCGAc -3' miRNA: 3'- gGGCGGCGa----CCUGCUuGCUG------CGGCUc -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 32346 | 0.7 | 0.264278 |
Target: 5'- aCCGCCGCccaGGucgcuGCGGuCGcCGCCGAGg -3' miRNA: 3'- gGGCGGCGa--CC-----UGCUuGCuGCGGCUC- -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 41120 | 0.7 | 0.284597 |
Target: 5'- gCCgGUgGC-GGAagaaGAACGGCGUCGAGg -3' miRNA: 3'- -GGgCGgCGaCCUg---CUUGCUGCGGCUC- -5' |
|||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 14060 | 0.7 | 0.284597 |
Target: 5'- gCCCGgCGCUGGGCGu-CGuuGCCuAGg -3' miRNA: 3'- -GGGCgGCGACCUGCuuGCugCGGcUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home