miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26787 3' -59.5 NC_005808.1 + 37803 0.74 0.132652
Target:  5'- uCCCGCagcgccagccggcgUGCUGGGCGcagugugGGCGaACGCCGAGa -3'
miRNA:   3'- -GGGCG--------------GCGACCUGC-------UUGC-UGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 14556 0.7 0.270917
Target:  5'- aCCGUCGCc-GACGuguucuucGGCGACGCCGAc -3'
miRNA:   3'- gGGCGGCGacCUGC--------UUGCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 32058 0.69 0.291639
Target:  5'- aCCCGuuGCgcgugGcGGCGGaaaGCGugGCCGGc -3'
miRNA:   3'- -GGGCggCGa----C-CUGCU---UGCugCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 4041 0.66 0.480129
Target:  5'- gCCgGCCGC-GG-CGAGCGGCagGCCa-- -3'
miRNA:   3'- -GGgCGGCGaCCuGCUUGCUG--CGGcuc -5'
26787 3' -59.5 NC_005808.1 + 16561 0.73 0.16618
Target:  5'- gCCCGCCGCgcGGGCuuuGAUGccauCGCCGAGg -3'
miRNA:   3'- -GGGCGGCGa-CCUGc--UUGCu---GCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 34805 0.73 0.174753
Target:  5'- -gCGCCuGCUGGGCGgcgaaggGugGACGCCGGc -3'
miRNA:   3'- ggGCGG-CGACCUGC-------UugCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 16929 0.72 0.189587
Target:  5'- aUCCGCCgGCUGauGACGuacAUGACGCCGGc -3'
miRNA:   3'- -GGGCGG-CGAC--CUGCu--UGCUGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 14706 0.72 0.194603
Target:  5'- aUCCGCgacgUGCUGGGCGAGC-ACGCCaAGa -3'
miRNA:   3'- -GGGCG----GCGACCUGCUUGcUGCGGcUC- -5'
26787 3' -59.5 NC_005808.1 + 27761 0.72 0.20873
Target:  5'- gCUgGCCGCcaacggcaucgaccUGGGCGAaggcaGCGcCGCCGAGg -3'
miRNA:   3'- -GGgCGGCG--------------ACCUGCU-----UGCuGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 13858 0.7 0.269579
Target:  5'- aCCG-CGCUGGACGAugccaagGCGcucauccucgcguGCGCCGAc -3'
miRNA:   3'- gGGCgGCGACCUGCU-------UGC-------------UGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 40530 0.71 0.245152
Target:  5'- aUCGUggUGCUGGGCG-ACGACcCCGAGg -3'
miRNA:   3'- gGGCG--GCGACCUGCuUGCUGcGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 3335 0.72 0.204984
Target:  5'- gCUGUCGCUGGugGAAUGcgucACGCCa-- -3'
miRNA:   3'- gGGCGGCGACCugCUUGC----UGCGGcuc -5'
26787 3' -59.5 NC_005808.1 + 29958 0.74 0.134097
Target:  5'- aCCCGaCGCcaaaGGACGGcagcaGCGAUGCCGAGc -3'
miRNA:   3'- -GGGCgGCGa---CCUGCU-----UGCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 16977 0.7 0.257771
Target:  5'- aCgCGCUGCUGG-CGAccGCGcCGCCGuGg -3'
miRNA:   3'- -GgGCGGCGACCuGCU--UGCuGCGGCuC- -5'
26787 3' -59.5 NC_005808.1 + 33277 0.74 0.134097
Target:  5'- gCCCGCCGCgccGACGuGCGccgccagguCGCCGAGg -3'
miRNA:   3'- -GGGCGGCGac-CUGCuUGCu--------GCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 21317 0.72 0.199735
Target:  5'- gCCGaCCGCUGGGCcGACacuuACGCCGAc -3'
miRNA:   3'- gGGC-GGCGACCUGcUUGc---UGCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 25662 0.7 0.266918
Target:  5'- -aCGCUGCUGGACGGcgccgugcccuACGAaaucgccaaucccuaCGCCGAa -3'
miRNA:   3'- ggGCGGCGACCUGCU-----------UGCU---------------GCGGCUc -5'
26787 3' -59.5 NC_005808.1 + 14250 0.7 0.27361
Target:  5'- aUCCGCgCGCUGcccGACGAggccaaggccaucgaGucCGACGCCGAGc -3'
miRNA:   3'- -GGGCG-GCGAC---CUGCU---------------U--GCUGCGGCUC- -5'
26787 3' -59.5 NC_005808.1 + 29176 0.74 0.144231
Target:  5'- gCCUGCCGUgGGACGAgaaccguuaccgcaACGAUGCCGc- -3'
miRNA:   3'- -GGGCGGCGaCCUGCU--------------UGCUGCGGCuc -5'
26787 3' -59.5 NC_005808.1 + 17478 0.72 0.183236
Target:  5'- cCCCGUgGCUGGACaagaagcacccgcuGuaucccACGGCGCCGGGc -3'
miRNA:   3'- -GGGCGgCGACCUG--------------Cu-----UGCUGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.