Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 35231 | 1.1 | 0.000284 |
Target: 5'- gCCCGCCGCUGGACGAACGACGCCGAGg -3' miRNA: 3'- -GGGCGGCGACCUGCUUGCUGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 3762 | 0.78 | 0.077289 |
Target: 5'- gCCGCCGCUGGACGuagccuCGGucgUGCCGAa -3' miRNA: 3'- gGGCGGCGACCUGCuu----GCU---GCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 37803 | 0.74 | 0.132652 |
Target: 5'- uCCCGCagcgccagccggcgUGCUGGGCGcagugugGGCGaACGCCGAGa -3' miRNA: 3'- -GGGCG--------------GCGACCUGC-------UUGC-UGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 33277 | 0.74 | 0.134097 |
Target: 5'- gCCCGCCGCgccGACGuGCGccgccagguCGCCGAGg -3' miRNA: 3'- -GGGCGGCGac-CUGCuUGCu--------GCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 29958 | 0.74 | 0.134097 |
Target: 5'- aCCCGaCGCcaaaGGACGGcagcaGCGAUGCCGAGc -3' miRNA: 3'- -GGGCgGCGa---CCUGCU-----UGCUGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 32855 | 0.74 | 0.134097 |
Target: 5'- cCUgGCCGCa-GACGGuCGGCGCCGAGa -3' miRNA: 3'- -GGgCGGCGacCUGCUuGCUGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 29176 | 0.74 | 0.144231 |
Target: 5'- gCCUGCCGUgGGACGAgaaccguuaccgcaACGAUGCCGc- -3' miRNA: 3'- -GGGCGGCGaCCUGCU--------------UGCUGCGGCuc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 16561 | 0.73 | 0.16618 |
Target: 5'- gCCCGCCGCgcGGGCuuuGAUGccauCGCCGAGg -3' miRNA: 3'- -GGGCGGCGa-CCUGc--UUGCu---GCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 34805 | 0.73 | 0.174753 |
Target: 5'- -gCGCCuGCUGGGCGgcgaaggGugGACGCCGGc -3' miRNA: 3'- ggGCGG-CGACCUGC-------UugCUGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 17478 | 0.72 | 0.183236 |
Target: 5'- cCCCGUgGCUGGACaagaagcacccgcuGuaucccACGGCGCCGGGc -3' miRNA: 3'- -GGGCGgCGACCUG--------------Cu-----UGCUGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 16929 | 0.72 | 0.189587 |
Target: 5'- aUCCGCCgGCUGauGACGuacAUGACGCCGGc -3' miRNA: 3'- -GGGCGG-CGAC--CUGCu--UGCUGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 14706 | 0.72 | 0.194603 |
Target: 5'- aUCCGCgacgUGCUGGGCGAGC-ACGCCaAGa -3' miRNA: 3'- -GGGCG----GCGACCUGCUUGcUGCGGcUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 22320 | 0.72 | 0.199735 |
Target: 5'- -aUGCUGCUGGccgugcCGAACG-CGCCGAGu -3' miRNA: 3'- ggGCGGCGACCu-----GCUUGCuGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 21317 | 0.72 | 0.199735 |
Target: 5'- gCCGaCCGCUGGGCcGACacuuACGCCGAc -3' miRNA: 3'- gGGC-GGCGACCUGcUUGc---UGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 36861 | 0.72 | 0.204984 |
Target: 5'- gCCCgGCgCGCUGGGCGAucuguGCGACauccucaagguGCCGAc -3' miRNA: 3'- -GGG-CG-GCGACCUGCU-----UGCUG-----------CGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 3335 | 0.72 | 0.204984 |
Target: 5'- gCUGUCGCUGGugGAAUGcgucACGCCa-- -3' miRNA: 3'- gGGCGGCGACCugCUUGC----UGCGGcuc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 27761 | 0.72 | 0.20873 |
Target: 5'- gCUgGCCGCcaacggcaucgaccUGGGCGAaggcaGCGcCGCCGAGg -3' miRNA: 3'- -GGgCGGCG--------------ACCUGCU-----UGCuGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 16893 | 0.71 | 0.215842 |
Target: 5'- cCCCGCCGCgGGGCuGGuaugagcaGCGuuGCCGAa -3' miRNA: 3'- -GGGCGGCGaCCUG-CU--------UGCugCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 1302 | 0.71 | 0.233049 |
Target: 5'- aCCGCCGCgcccaGGGCGA-CGGCcaccagGCCGAc -3' miRNA: 3'- gGGCGGCGa----CCUGCUuGCUG------CGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 40530 | 0.71 | 0.245152 |
Target: 5'- aUCGUggUGCUGGGCG-ACGACcCCGAGg -3' miRNA: 3'- gGGCG--GCGACCUGCuUGCUGcGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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