Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26787 | 3' | -59.5 | NC_005808.1 | + | 1302 | 0.71 | 0.233049 |
Target: 5'- aCCGCCGCgcccaGGGCGA-CGGCcaccagGCCGAc -3' miRNA: 3'- gGGCGGCGa----CCUGCUuGCUG------CGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 2745 | 0.69 | 0.321167 |
Target: 5'- gCCCGgCGCUGcuCGGGCG-UGCCGAc -3' miRNA: 3'- -GGGCgGCGACcuGCUUGCuGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 3335 | 0.72 | 0.204984 |
Target: 5'- gCUGUCGCUGGugGAAUGcgucACGCCa-- -3' miRNA: 3'- gGGCGGCGACCugCUUGC----UGCGGcuc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 3762 | 0.78 | 0.077289 |
Target: 5'- gCCGCCGCUGGACGuagccuCGGucgUGCCGAa -3' miRNA: 3'- gGGCGGCGACCUGCuu----GCU---GCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 4035 | 0.67 | 0.413498 |
Target: 5'- -aUGCCGCgcgGGuCGAGCG-CaGCCGGGc -3' miRNA: 3'- ggGCGGCGa--CCuGCUUGCuG-CGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 4041 | 0.66 | 0.480129 |
Target: 5'- gCCgGCCGC-GG-CGAGCGGCagGCCa-- -3' miRNA: 3'- -GGgCGGCGaCCuGCUUGCUG--CGGcuc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 7171 | 0.66 | 0.47028 |
Target: 5'- gCCgGgCGCUugucGGAUucggGGGCGACGCUGGGc -3' miRNA: 3'- -GGgCgGCGA----CCUG----CUUGCUGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 8994 | 0.67 | 0.413498 |
Target: 5'- cCUCGCCGCgcggGGGCGcuuccagcaGGCGGCGCa--- -3' miRNA: 3'- -GGGCGGCGa---CCUGC---------UUGCUGCGgcuc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 10549 | 0.67 | 0.386736 |
Target: 5'- gUCGCauaGUUGuGCGAGCG-CGCCGGGu -3' miRNA: 3'- gGGCGg--CGACcUGCUUGCuGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 11148 | 0.66 | 0.450897 |
Target: 5'- gCCUGCUGCUGGGCcgccuGCGcacguugcguGCGCUGGu -3' miRNA: 3'- -GGGCGGCGACCUGcu---UGC----------UGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 11233 | 0.67 | 0.429161 |
Target: 5'- uCCCGCCcacgcccacuaGCgUGG-CGAugaggguuugcgcuGCGGCGCUGGGa -3' miRNA: 3'- -GGGCGG-----------CG-ACCuGCU--------------UGCUGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 11361 | 0.68 | 0.344744 |
Target: 5'- gCUCGuaGCUGGGCc-GCG-CGCCGGGg -3' miRNA: 3'- -GGGCggCGACCUGcuUGCuGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 11841 | 0.69 | 0.32889 |
Target: 5'- gCCgCGCCGCgguuggccUGGGCGAACcccGCGCCa-- -3' miRNA: 3'- -GG-GCGGCG--------ACCUGCUUGc--UGCGGcuc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 11928 | 0.66 | 0.448983 |
Target: 5'- aCCGCCgugcccagGCUGGACaguaccgacuCGAUGCCGGu -3' miRNA: 3'- gGGCGG--------CGACCUGcuu-------GCUGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 13500 | 0.66 | 0.441372 |
Target: 5'- aCCgCGCCuuUGGGCGAgguaaGCGguuugccguccGCGCCGAa -3' miRNA: 3'- -GG-GCGGcgACCUGCU-----UGC-----------UGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 13560 | 0.67 | 0.395529 |
Target: 5'- gCCGCCGgUGGGuauCGAccuggccgaagcGCGGCGCCuGGu -3' miRNA: 3'- gGGCGGCgACCU---GCU------------UGCUGCGGcUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 13727 | 0.67 | 0.404451 |
Target: 5'- -aCGCCaGCagcgaGGACGuggcGCGGCGCUGGGa -3' miRNA: 3'- ggGCGG-CGa----CCUGCu---UGCUGCGGCUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 13858 | 0.7 | 0.269579 |
Target: 5'- aCCG-CGCUGGACGAugccaagGCGcucauccucgcguGCGCCGAc -3' miRNA: 3'- gGGCgGCGACCUGCU-------UGC-------------UGCGGCUc -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 14060 | 0.7 | 0.284597 |
Target: 5'- gCCCGgCGCUGGGCGu-CGuuGCCuAGg -3' miRNA: 3'- -GGGCgGCGACCUGCuuGCugCGGcUC- -5' |
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26787 | 3' | -59.5 | NC_005808.1 | + | 14250 | 0.7 | 0.27361 |
Target: 5'- aUCCGCgCGCUGcccGACGAggccaaggccaucgaGucCGACGCCGAGc -3' miRNA: 3'- -GGGCG-GCGAC---CUGCU---------------U--GCUGCGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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