miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26788 3' -59.6 NC_005808.1 + 8658 0.69 0.300379
Target:  5'- uUCAUCGCGCGgucGGCauugCGugCCGCgCGCa -3'
miRNA:   3'- -GGUAGUGCGC---UCG----GCugGGCGaGCGc -5'
26788 3' -59.6 NC_005808.1 + 6385 0.69 0.307742
Target:  5'- -aAUCAgGCGcaGGCCGGCCgGCccgguguagUCGCGg -3'
miRNA:   3'- ggUAGUgCGC--UCGGCUGGgCG---------AGCGC- -5'
26788 3' -59.6 NC_005808.1 + 23761 0.68 0.32288
Target:  5'- gCCGgcgcCAC-CGGGCCGAUgCGC-CGCGg -3'
miRNA:   3'- -GGUa---GUGcGCUCGGCUGgGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 25202 0.68 0.338567
Target:  5'- gCA-CGCGCGAccGCUGGCCCgGCUUGUu -3'
miRNA:   3'- gGUaGUGCGCU--CGGCUGGG-CGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 26246 0.68 0.360609
Target:  5'- gCGUCGC-CGAaggcacgggcacccGCCGGCCUggucgGCUCGCGc -3'
miRNA:   3'- gGUAGUGcGCU--------------CGGCUGGG-----CGAGCGC- -5'
26788 3' -59.6 NC_005808.1 + 27820 0.68 0.363119
Target:  5'- uCC-UCGCGCGcGCUG-CCCGCgguggCGCc -3'
miRNA:   3'- -GGuAGUGCGCuCGGCuGGGCGa----GCGc -5'
26788 3' -59.6 NC_005808.1 + 4528 0.67 0.380161
Target:  5'- aCGUgGCGUGcugggcGGUCGugCCGC-CGCGg -3'
miRNA:   3'- gGUAgUGCGC------UCGGCugGGCGaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 35150 0.67 0.380161
Target:  5'- gCCAuUCGCGCGAagGCCGAagccgaaCUGCUgGCc -3'
miRNA:   3'- -GGU-AGUGCGCU--CGGCUg------GGCGAgCGc -5'
26788 3' -59.6 NC_005808.1 + 23424 0.67 0.397729
Target:  5'- cCgGUCAgUGCGAcGCCGGCCgGgaUGCGg -3'
miRNA:   3'- -GgUAGU-GCGCU-CGGCUGGgCgaGCGC- -5'
26788 3' -59.6 NC_005808.1 + 39337 0.67 0.41581
Target:  5'- aCUAUCugGCGcggaAGCUGAauCCCGC-CGgGg -3'
miRNA:   3'- -GGUAGugCGC----UCGGCU--GGGCGaGCgC- -5'
26788 3' -59.6 NC_005808.1 + 15239 0.66 0.443852
Target:  5'- aUCAUCaACGgcagaGGGUCGGCCUGC-CGCa -3'
miRNA:   3'- -GGUAG-UGCg----CUCGGCUGGGCGaGCGc -5'
26788 3' -59.6 NC_005808.1 + 25301 0.66 0.443852
Target:  5'- -gGUCGUGCG-GCCGGCCCugccaccggcGCUCGUc -3'
miRNA:   3'- ggUAGUGCGCuCGGCUGGG----------CGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 9528 0.66 0.467033
Target:  5'- gCAUCAUGCugcGGCCcuguucggccagugcGAUCUGCUCGCc -3'
miRNA:   3'- gGUAGUGCGc--UCGG---------------CUGGGCGAGCGc -5'
26788 3' -59.6 NC_005808.1 + 37582 0.66 0.472926
Target:  5'- gCAUCGCggcgcugaaaGCGGacugcGCCGACCUGCuguUCGCc -3'
miRNA:   3'- gGUAGUG----------CGCU-----CGGCUGGGCG---AGCGc -5'
26788 3' -59.6 NC_005808.1 + 10196 0.66 0.472926
Target:  5'- aCGUCAaGCGcacGCCGGCCCGauggUCgGCGg -3'
miRNA:   3'- gGUAGUgCGCu--CGGCUGGGCg---AG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.