miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26789 5' -54.8 NC_005808.1 + 216 0.66 0.675245
Target:  5'- aCGGCGAacugGCGCAccucGG-CAuuGGcGCGCUGg -3'
miRNA:   3'- gGUCGCUa---CGCGU----UCaGU--UC-CGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 1724 0.66 0.630081
Target:  5'- gCCGGCGAggGCGUccAAGUCcucgcGGGUGUUa -3'
miRNA:   3'- -GGUCGCUa-CGCG--UUCAGu----UCCGCGAc -5'
26789 5' -54.8 NC_005808.1 + 3741 0.66 0.641397
Target:  5'- gCCGGUGGUGgGCAcGUCGGuGCcgccGCUGg -3'
miRNA:   3'- -GGUCGCUACgCGUuCAGUUcCG----CGAC- -5'
26789 5' -54.8 NC_005808.1 + 4026 0.73 0.258901
Target:  5'- aCCAGCGucaugccGCGCGGGUCGAG-CGCa- -3'
miRNA:   3'- -GGUCGCua-----CGCGUUCAGUUCcGCGac -5'
26789 5' -54.8 NC_005808.1 + 5283 0.69 0.486591
Target:  5'- uCCAGCGucgauUGCugcaugucugGCAGGUCGAGGcCGUa- -3'
miRNA:   3'- -GGUCGCu----ACG----------CGUUCAGUUCC-GCGac -5'
26789 5' -54.8 NC_005808.1 + 6342 0.69 0.455513
Target:  5'- cCCAGCcaaaGCGCccggcccgaAGGcCGGGGCGCUGg -3'
miRNA:   3'- -GGUCGcua-CGCG---------UUCaGUUCCGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 6619 0.69 0.445393
Target:  5'- aCCAGCGG-GCGCGu-----GGCGCUGc -3'
miRNA:   3'- -GGUCGCUaCGCGUucaguuCCGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 7132 0.66 0.652704
Target:  5'- cCCAGCGGU-UGCAua--AGGGCGCUc -3'
miRNA:   3'- -GGUCGCUAcGCGUucagUUCCGCGAc -5'
26789 5' -54.8 NC_005808.1 + 7796 0.69 0.475076
Target:  5'- -aGGCGAUGggcaugucccacuCGCugauauGGUCGAGGCGCg- -3'
miRNA:   3'- ggUCGCUAC-------------GCGu-----UCAGUUCCGCGac -5'
26789 5' -54.8 NC_005808.1 + 8192 0.66 0.630081
Target:  5'- gCCGGCGAUuucaucGCGCAcggccucguAGUC---GCGCUGg -3'
miRNA:   3'- -GGUCGCUA------CGCGU---------UCAGuucCGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 8311 0.73 0.272857
Target:  5'- gCCAGCGGUGCGCGcugcUCGGGGaaaGUUGc -3'
miRNA:   3'- -GGUCGCUACGCGUuc--AGUUCCg--CGAC- -5'
26789 5' -54.8 NC_005808.1 + 9212 0.68 0.529507
Target:  5'- gCGGCGcgGCGCAcGUUcugcGGCGCg- -3'
miRNA:   3'- gGUCGCuaCGCGUuCAGuu--CCGCGac -5'
26789 5' -54.8 NC_005808.1 + 10888 0.67 0.607467
Target:  5'- cCCGcGCGcgGCGgGcuGGUCAGgcGGUGCUGc -3'
miRNA:   3'- -GGU-CGCuaCGCgU--UCAGUU--CCGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 11422 0.73 0.287412
Target:  5'- gCGGCGAgccggcGUGCAGGUCGccgauaAGGCGCg- -3'
miRNA:   3'- gGUCGCUa-----CGCGUUCAGU------UCCGCGac -5'
26789 5' -54.8 NC_005808.1 + 11651 0.7 0.425538
Target:  5'- gCCAGCu-UGCGUAGcGUUuccccacuGGGGCGCUGa -3'
miRNA:   3'- -GGUCGcuACGCGUU-CAG--------UUCCGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 12047 0.67 0.607467
Target:  5'- cCCAGCG-UGuCG-AAGUCGAuGGCGCc- -3'
miRNA:   3'- -GGUCGCuAC-GCgUUCAGUU-CCGCGac -5'
26789 5' -54.8 NC_005808.1 + 12502 0.66 0.641397
Target:  5'- aCAGUGGcguuuuucaUGaacaGCGcGUCGAGGUGCUGc -3'
miRNA:   3'- gGUCGCU---------ACg---CGUuCAGUUCCGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 14329 0.66 0.652704
Target:  5'- cCCAGCGcgcggucaugGUGCGCAacauGGUgAGccuGGCGCa- -3'
miRNA:   3'- -GGUCGC----------UACGCGU----UCAgUU---CCGCGac -5'
26789 5' -54.8 NC_005808.1 + 16326 0.68 0.54046
Target:  5'- --cGCGAUGCGCGAGcCGaccaggccggcGGGUGCc- -3'
miRNA:   3'- gguCGCUACGCGUUCaGU-----------UCCGCGac -5'
26789 5' -54.8 NC_005808.1 + 18433 0.73 0.265805
Target:  5'- aCGcCGAagcGCGCAGccGUCGAGGCGCUGg -3'
miRNA:   3'- gGUcGCUa--CGCGUU--CAGUUCCGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.