Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26789 | 5' | -54.8 | NC_005808.1 | + | 18848 | 0.66 | 0.675245 |
Target: 5'- cCCGGUG--GCGCcGG-CAuGGCGCUGc -3' miRNA: 3'- -GGUCGCuaCGCGuUCaGUuCCGCGAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 19362 | 0.66 | 0.618768 |
Target: 5'- cCCAGCGAgGCGCG-GUCGGuGGC-Cg- -3' miRNA: 3'- -GGUCGCUaCGCGUuCAGUU-CCGcGac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 21691 | 0.67 | 0.607467 |
Target: 5'- gCCAGaaGGUGCGaCAGGUCGAGGU--UGa -3' miRNA: 3'- -GGUCg-CUACGC-GUUCAGUUCCGcgAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 24182 | 0.7 | 0.40622 |
Target: 5'- uUCGGCGuguccaugaGCGCGAG-CAcguAGGCGCUGc -3' miRNA: 3'- -GGUCGCua-------CGCGUUCaGU---UCCGCGAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 24313 | 0.66 | 0.641397 |
Target: 5'- gUCGGCGAgcaGcCGCGGGUC-AGGCGg-- -3' miRNA: 3'- -GGUCGCUa--C-GCGUUCAGuUCCGCgac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 26193 | 0.72 | 0.30959 |
Target: 5'- -uGGCGAUggcuucgGUGUAGGUCGAGGCGUUu -3' miRNA: 3'- ggUCGCUA-------CGCGUUCAGUUCCGCGAc -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 27439 | 0.73 | 0.28006 |
Target: 5'- cCCGGCGGc-CGCAGGcCcuGGCGCUGg -3' miRNA: 3'- -GGUCGCUacGCGUUCaGuuCCGCGAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 28682 | 0.72 | 0.304896 |
Target: 5'- gCCAGCGcgGCGCGccacgucguucacaaGGUCGAugcugucGGCGCa- -3' miRNA: 3'- -GGUCGCuaCGCGU---------------UCAGUU-------CCGCGac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 28755 | 0.71 | 0.369283 |
Target: 5'- uCCAGCGcgGUGCGcuUCucGGCGCg- -3' miRNA: 3'- -GGUCGCuaCGCGUucAGuuCCGCGac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 29979 | 0.67 | 0.584941 |
Target: 5'- gCAGCGAUGC-CGAGcgCGucGGCGCc- -3' miRNA: 3'- gGUCGCUACGcGUUCa-GUu-CCGCGac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 30634 | 0.69 | 0.465756 |
Target: 5'- aCCAGCcg-GCGCGAaUgAGGGCGCa- -3' miRNA: 3'- -GGUCGcuaCGCGUUcAgUUCCGCGac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 33614 | 0.67 | 0.596188 |
Target: 5'- cCCcGCGcgGCG-AGGaaaUCGAGGCGCUu -3' miRNA: 3'- -GGuCGCuaCGCgUUC---AGUUCCGCGAc -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 33950 | 0.66 | 0.66399 |
Target: 5'- aCAGCGAguacgGCGCGGccUggGGCGUUu -3' miRNA: 3'- gGUCGCUa----CGCGUUcaGuuCCGCGAc -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 35802 | 1.11 | 0.000547 |
Target: 5'- cCCAGCGAUGCGCAAGUCAAGGCGCUGa -3' miRNA: 3'- -GGUCGCUACGCGUUCAGUUCCGCGAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 36816 | 0.66 | 0.630081 |
Target: 5'- gCC-GCGAUG-GCGggacacgauGGUCAAGGCcCUGg -3' miRNA: 3'- -GGuCGCUACgCGU---------UCAGUUCCGcGAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 38752 | 0.68 | 0.54046 |
Target: 5'- gCGGCGAggUGCGCAA----AGuGCGCUGg -3' miRNA: 3'- gGUCGCU--ACGCGUUcaguUC-CGCGAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 38986 | 0.69 | 0.454496 |
Target: 5'- gCCAGCGAagcaaaaUGCGCG-GUCAAGGUu--- -3' miRNA: 3'- -GGUCGCU-------ACGCGUuCAGUUCCGcgac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 39818 | 0.68 | 0.507857 |
Target: 5'- -gGGCGcaccUGCGCAAcGUCGAGGUGUc- -3' miRNA: 3'- ggUCGCu---ACGCGUU-CAGUUCCGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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