Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26789 | 5' | -54.8 | NC_005808.1 | + | 24182 | 0.7 | 0.40622 |
Target: 5'- uUCGGCGuguccaugaGCGCGAG-CAcguAGGCGCUGc -3' miRNA: 3'- -GGUCGCua-------CGCGUUCaGU---UCCGCGAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 38986 | 0.69 | 0.454496 |
Target: 5'- gCCAGCGAagcaaaaUGCGCG-GUCAAGGUu--- -3' miRNA: 3'- -GGUCGCU-------ACGCGUuCAGUUCCGcgac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 30634 | 0.69 | 0.465756 |
Target: 5'- aCCAGCcg-GCGCGAaUgAGGGCGCa- -3' miRNA: 3'- -GGUCGcuaCGCGUUcAgUUCCGCGac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 39818 | 0.68 | 0.507857 |
Target: 5'- -gGGCGcaccUGCGCAAcGUCGAGGUGUc- -3' miRNA: 3'- ggUCGCu---ACGCGUU-CAGUUCCGCGac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 29979 | 0.67 | 0.584941 |
Target: 5'- gCAGCGAUGC-CGAGcgCGucGGCGCc- -3' miRNA: 3'- gGUCGCUACGcGUUCa-GUu-CCGCGac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 33614 | 0.67 | 0.596188 |
Target: 5'- cCCcGCGcgGCG-AGGaaaUCGAGGCGCUu -3' miRNA: 3'- -GGuCGCuaCGCgUUC---AGUUCCGCGAc -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 10888 | 0.67 | 0.607467 |
Target: 5'- cCCGcGCGcgGCGgGcuGGUCAGgcGGUGCUGc -3' miRNA: 3'- -GGU-CGCuaCGCgU--UCAGUU--CCGCGAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 19362 | 0.66 | 0.618768 |
Target: 5'- cCCAGCGAgGCGCG-GUCGGuGGC-Cg- -3' miRNA: 3'- -GGUCGCUaCGCGUuCAGUU-CCGcGac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 14329 | 0.66 | 0.652704 |
Target: 5'- cCCAGCGcgcggucaugGUGCGCAacauGGUgAGccuGGCGCa- -3' miRNA: 3'- -GGUCGC----------UACGCGU----UCAgUU---CCGCGac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 16326 | 0.68 | 0.54046 |
Target: 5'- --cGCGAUGCGCGAGcCGaccaggccggcGGGUGCc- -3' miRNA: 3'- gguCGCUACGCGUUCaGU-----------UCCGCGac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 5283 | 0.69 | 0.486591 |
Target: 5'- uCCAGCGucgauUGCugcaugucugGCAGGUCGAGGcCGUa- -3' miRNA: 3'- -GGUCGCu----ACG----------CGUUCAGUUCC-GCGac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 7796 | 0.69 | 0.475076 |
Target: 5'- -aGGCGAUGggcaugucccacuCGCugauauGGUCGAGGCGCg- -3' miRNA: 3'- ggUCGCUAC-------------GCGu-----UCAGUUCCGCGac -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 6342 | 0.69 | 0.455513 |
Target: 5'- cCCAGCcaaaGCGCccggcccgaAGGcCGGGGCGCUGg -3' miRNA: 3'- -GGUCGcua-CGCG---------UUCaGUUCCGCGAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 6619 | 0.69 | 0.445393 |
Target: 5'- aCCAGCGG-GCGCGu-----GGCGCUGc -3' miRNA: 3'- -GGUCGCUaCGCGUucaguuCCGCGAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 11651 | 0.7 | 0.425538 |
Target: 5'- gCCAGCu-UGCGUAGcGUUuccccacuGGGGCGCUGa -3' miRNA: 3'- -GGUCGcuACGCGUU-CAG--------UUCCGCGAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 8311 | 0.73 | 0.272857 |
Target: 5'- gCCAGCGGUGCGCGcugcUCGGGGaaaGUUGc -3' miRNA: 3'- -GGUCGCUACGCGUuc--AGUUCCg--CGAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 18433 | 0.73 | 0.265805 |
Target: 5'- aCGcCGAagcGCGCAGccGUCGAGGCGCUGg -3' miRNA: 3'- gGUcGCUa--CGCGUU--CAGUUCCGCGAC- -5' |
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26789 | 5' | -54.8 | NC_005808.1 | + | 18848 | 0.66 | 0.675245 |
Target: 5'- cCCGGUG--GCGCcGG-CAuGGCGCUGc -3' miRNA: 3'- -GGUCGCuaCGCGuUCaGUuCCGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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