miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26789 5' -54.8 NC_005808.1 + 18433 0.73 0.265805
Target:  5'- aCGcCGAagcGCGCAGccGUCGAGGCGCUGg -3'
miRNA:   3'- gGUcGCUa--CGCGUU--CAGUUCCGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 19362 0.66 0.618768
Target:  5'- cCCAGCGAgGCGCG-GUCGGuGGC-Cg- -3'
miRNA:   3'- -GGUCGCUaCGCGUuCAGUU-CCGcGac -5'
26789 5' -54.8 NC_005808.1 + 29979 0.67 0.584941
Target:  5'- gCAGCGAUGC-CGAGcgCGucGGCGCc- -3'
miRNA:   3'- gGUCGCUACGcGUUCa-GUu-CCGCGac -5'
26789 5' -54.8 NC_005808.1 + 16326 0.68 0.54046
Target:  5'- --cGCGAUGCGCGAGcCGaccaggccggcGGGUGCc- -3'
miRNA:   3'- gguCGCUACGCGUUCaGU-----------UCCGCGac -5'
26789 5' -54.8 NC_005808.1 + 7796 0.69 0.475076
Target:  5'- -aGGCGAUGggcaugucccacuCGCugauauGGUCGAGGCGCg- -3'
miRNA:   3'- ggUCGCUAC-------------GCGu-----UCAGUUCCGCGac -5'
26789 5' -54.8 NC_005808.1 + 6342 0.69 0.455513
Target:  5'- cCCAGCcaaaGCGCccggcccgaAGGcCGGGGCGCUGg -3'
miRNA:   3'- -GGUCGcua-CGCG---------UUCaGUUCCGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 18848 0.66 0.675245
Target:  5'- cCCGGUG--GCGCcGG-CAuGGCGCUGc -3'
miRNA:   3'- -GGUCGCuaCGCGuUCaGUuCCGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 10888 0.67 0.607467
Target:  5'- cCCGcGCGcgGCGgGcuGGUCAGgcGGUGCUGc -3'
miRNA:   3'- -GGU-CGCuaCGCgU--UCAGUU--CCGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 5283 0.69 0.486591
Target:  5'- uCCAGCGucgauUGCugcaugucugGCAGGUCGAGGcCGUa- -3'
miRNA:   3'- -GGUCGCu----ACG----------CGUUCAGUUCC-GCGac -5'
26789 5' -54.8 NC_005808.1 + 6619 0.69 0.445393
Target:  5'- aCCAGCGG-GCGCGu-----GGCGCUGc -3'
miRNA:   3'- -GGUCGCUaCGCGUucaguuCCGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 8311 0.73 0.272857
Target:  5'- gCCAGCGGUGCGCGcugcUCGGGGaaaGUUGc -3'
miRNA:   3'- -GGUCGCUACGCGUuc--AGUUCCg--CGAC- -5'
26789 5' -54.8 NC_005808.1 + 11651 0.7 0.425538
Target:  5'- gCCAGCu-UGCGUAGcGUUuccccacuGGGGCGCUGa -3'
miRNA:   3'- -GGUCGcuACGCGUU-CAG--------UUCCGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 33614 0.67 0.596188
Target:  5'- cCCcGCGcgGCG-AGGaaaUCGAGGCGCUu -3'
miRNA:   3'- -GGuCGCuaCGCgUUC---AGUUCCGCGAc -5'
26789 5' -54.8 NC_005808.1 + 14329 0.66 0.652704
Target:  5'- cCCAGCGcgcggucaugGUGCGCAacauGGUgAGccuGGCGCa- -3'
miRNA:   3'- -GGUCGC----------UACGCGU----UCAgUU---CCGCGac -5'
26789 5' -54.8 NC_005808.1 + 12047 0.67 0.607467
Target:  5'- cCCAGCG-UGuCG-AAGUCGAuGGCGCc- -3'
miRNA:   3'- -GGUCGCuAC-GCgUUCAGUU-CCGCGac -5'
26789 5' -54.8 NC_005808.1 + 21691 0.67 0.607467
Target:  5'- gCCAGaaGGUGCGaCAGGUCGAGGU--UGa -3'
miRNA:   3'- -GGUCg-CUACGC-GUUCAGUUCCGcgAC- -5'
26789 5' -54.8 NC_005808.1 + 38752 0.68 0.54046
Target:  5'- gCGGCGAggUGCGCAA----AGuGCGCUGg -3'
miRNA:   3'- gGUCGCU--ACGCGUUcaguUC-CGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 9212 0.68 0.529507
Target:  5'- gCGGCGcgGCGCAcGUUcugcGGCGCg- -3'
miRNA:   3'- gGUCGCuaCGCGUuCAGuu--CCGCGac -5'
26789 5' -54.8 NC_005808.1 + 27439 0.73 0.28006
Target:  5'- cCCGGCGGc-CGCAGGcCcuGGCGCUGg -3'
miRNA:   3'- -GGUCGCUacGCGUUCaGuuCCGCGAC- -5'
26789 5' -54.8 NC_005808.1 + 28755 0.71 0.369283
Target:  5'- uCCAGCGcgGUGCGcuUCucGGCGCg- -3'
miRNA:   3'- -GGUCGCuaCGCGUucAGuuCCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.