miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26792 3' -51.7 NC_005808.1 + 186 0.72 0.478562
Target:  5'- uCGCuGGGCAccgucacgcugccgGGCGAC-ACGGCGaacuGGCGCa -3'
miRNA:   3'- -GCG-UCCGU--------------UUGUUGaUGCCGU----UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 621 0.68 0.730912
Target:  5'- aGCAGcGCcGugGAC-ACGGCGuccGGCGUc -3'
miRNA:   3'- gCGUC-CGuUugUUGaUGCCGU---UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 639 0.71 0.514391
Target:  5'- gCGCGGGUGAACGGgUcaGGCGGGgGCu -3'
miRNA:   3'- -GCGUCCGUUUGUUgAugCCGUUCgCG- -5'
26792 3' -51.7 NC_005808.1 + 813 0.66 0.824835
Target:  5'- aGCAGGU----GGCUG-GGCuuGAGCGCg -3'
miRNA:   3'- gCGUCCGuuugUUGAUgCCG--UUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 1663 0.66 0.805216
Target:  5'- aGCAGGUcuuGCAccucgcgcuuggACUcGCGGCGAGC-Ca -3'
miRNA:   3'- gCGUCCGuu-UGU------------UGA-UGCCGUUCGcG- -5'
26792 3' -51.7 NC_005808.1 + 1710 0.68 0.685758
Target:  5'- cCGUGGGCcGGCGugc-CGGCGAGgGCg -3'
miRNA:   3'- -GCGUCCGuUUGUugauGCCGUUCgCG- -5'
26792 3' -51.7 NC_005808.1 + 1867 0.68 0.7085
Target:  5'- uGCAGGUu--CAGCccgUGGCcGGCGCu -3'
miRNA:   3'- gCGUCCGuuuGUUGau-GCCGuUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 1898 0.7 0.5935
Target:  5'- gGUGGGCGAACAGCaGCGGgAuuuuuccuGCGUu -3'
miRNA:   3'- gCGUCCGUUUGUUGaUGCCgUu-------CGCG- -5'
26792 3' -51.7 NC_005808.1 + 2036 0.73 0.429771
Target:  5'- gCGCAGGCGAuAgAAC-ACGGC--GCGCa -3'
miRNA:   3'- -GCGUCCGUU-UgUUGaUGCCGuuCGCG- -5'
26792 3' -51.7 NC_005808.1 + 2234 0.67 0.752886
Target:  5'- gCGCA-GCAGGCGGCgcgUGGCc-GCGCa -3'
miRNA:   3'- -GCGUcCGUUUGUUGau-GCCGuuCGCG- -5'
26792 3' -51.7 NC_005808.1 + 2310 0.7 0.559194
Target:  5'- uCGCGGGCGucCAGCgacaGGCAcagaucGCGCa -3'
miRNA:   3'- -GCGUCCGUuuGUUGaug-CCGUu-----CGCG- -5'
26792 3' -51.7 NC_005808.1 + 2361 0.8 0.156409
Target:  5'- uGCuGGGCAAACGGCaACGGUucgAGGCGCa -3'
miRNA:   3'- gCG-UCCGUUUGUUGaUGCCG---UUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 2373 0.72 0.474302
Target:  5'- uGCAcguGGCAGACGcccgcguGCguacccuugucaggGCGGCAAGCGUa -3'
miRNA:   3'- gCGU---CCGUUUGU-------UGa-------------UGCCGUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 2442 0.7 0.582015
Target:  5'- --aAGGCGccgaAACUGCGGCccAGGCGCu -3'
miRNA:   3'- gcgUCCGUuug-UUGAUGCCG--UUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 2548 0.68 0.7085
Target:  5'- aGCGgucaaccuuGGCAuguGCGAC-ACGGCccAGCGCg -3'
miRNA:   3'- gCGU---------CCGUu--UGUUGaUGCCGu-UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 3800 0.66 0.805216
Target:  5'- gGuCGGGCAGcAUGACcagGCGGUcggGGGCGCc -3'
miRNA:   3'- gC-GUCCGUU-UGUUGa--UGCCG---UUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 4046 0.68 0.7085
Target:  5'- cCGC-GGCGAGCGGCa--GGCcAGCGg -3'
miRNA:   3'- -GCGuCCGUUUGUUGaugCCGuUCGCg -5'
26792 3' -51.7 NC_005808.1 + 4194 0.67 0.773261
Target:  5'- gGCGGGCAuguuggccgcgAGCAcgucgcgGCuUGCGGCuuGCGUa -3'
miRNA:   3'- gCGUCCGU-----------UUGU-------UG-AUGCCGuuCGCG- -5'
26792 3' -51.7 NC_005808.1 + 4339 0.7 0.559194
Target:  5'- uGCGGGCugggguAGCAgaggaaucgGCcggACGGCAGGCGg -3'
miRNA:   3'- gCGUCCGu-----UUGU---------UGa--UGCCGUUCGCg -5'
26792 3' -51.7 NC_005808.1 + 4590 0.68 0.685758
Target:  5'- gCGcCAGGCGAGgAACUGCucGGCcucGGCGa -3'
miRNA:   3'- -GC-GUCCGUUUgUUGAUG--CCGu--UCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.