miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26792 3' -51.7 NC_005808.1 + 36089 0.97 0.010637
Target:  5'- gCGCAGGacAACAACUACGGCAAGCGCg -3'
miRNA:   3'- -GCGUCCguUUGUUGAUGCCGUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 41425 0.82 0.126466
Target:  5'- gGCAGcGCGAuACGGCUguccuucaccaucgACGGCGAGCGCa -3'
miRNA:   3'- gCGUC-CGUU-UGUUGA--------------UGCCGUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 9734 0.81 0.135277
Target:  5'- cCGCGGGCGAACuGCUcGUGGUggGCGCg -3'
miRNA:   3'- -GCGUCCGUUUGuUGA-UGCCGuuCGCG- -5'
26792 3' -51.7 NC_005808.1 + 14782 0.81 0.143396
Target:  5'- cCGCGGGCAgcgcgcgcgagGACGuGCUGCGGCugcgcGGCGCg -3'
miRNA:   3'- -GCGUCCGU-----------UUGU-UGAUGCCGu----UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 2361 0.8 0.156409
Target:  5'- uGCuGGGCAAACGGCaACGGUucgAGGCGCa -3'
miRNA:   3'- gCG-UCCGUUUGUUGaUGCCG---UUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 14716 0.8 0.16098
Target:  5'- uGCuGGGCGAGCAcGCcaagAUGGCGAGCGCg -3'
miRNA:   3'- gCG-UCCGUUUGU-UGa---UGCCGUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 27121 0.79 0.17542
Target:  5'- cCGguGGCGAuGCAACUggACGGCAgcuucggccaagGGCGCg -3'
miRNA:   3'- -GCguCCGUU-UGUUGA--UGCCGU------------UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 29404 0.79 0.180484
Target:  5'- uGCAGGCGuACAACgcCGGCcaaGGGCGCc -3'
miRNA:   3'- gCGUCCGUuUGUUGauGCCG---UUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 25603 0.77 0.251932
Target:  5'- -cCAGGCAGugGCAACcACGGC-GGCGCg -3'
miRNA:   3'- gcGUCCGUU--UGUUGaUGCCGuUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 13440 0.77 0.258835
Target:  5'- gGCAGGCccgcCAGCUugGCGGCcucGGGCGCg -3'
miRNA:   3'- gCGUCCGuuu-GUUGA--UGCCG---UUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 35080 0.76 0.287995
Target:  5'- gCGCAcGGUAGACAACgccauccuCGGCAaccugcugGGCGCg -3'
miRNA:   3'- -GCGU-CCGUUUGUUGau------GCCGU--------UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 40002 0.75 0.311518
Target:  5'- uCGUuccGGUu-GCAACaggGCGGCAAGCGCg -3'
miRNA:   3'- -GCGu--CCGuuUGUUGa--UGCCGUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 40126 0.74 0.371961
Target:  5'- gGCAGGCuugguuccuGGACAAa---GGCGAGCGCc -3'
miRNA:   3'- gCGUCCG---------UUUGUUgaugCCGUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 17918 0.74 0.371961
Target:  5'- aGCcuGGGCGugGACGugGCccGCGGCGGGCGCg -3'
miRNA:   3'- gCG--UCCGU--UUGU--UGa-UGCCGUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 10858 0.73 0.400201
Target:  5'- aGCAGGCccuGCGugGCUuCGGUcGGCGCg -3'
miRNA:   3'- gCGUCCGuu-UGU--UGAuGCCGuUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 29015 0.73 0.400201
Target:  5'- -cCAGGUGAGCG---AUGGCGAGCGCg -3'
miRNA:   3'- gcGUCCGUUUGUugaUGCCGUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 13797 0.73 0.409913
Target:  5'- gCGCuGGCugcucaagaucGGCAACcAgGGCAAGCGCg -3'
miRNA:   3'- -GCGuCCGu----------UUGUUGaUgCCGUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 35840 0.73 0.424754
Target:  5'- gGCGGGCAAACuaaagaccuuuccGCUauugagcGCGGCGgcccAGCGCa -3'
miRNA:   3'- gCGUCCGUUUGu------------UGA-------UGCCGU----UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 8881 0.73 0.426756
Target:  5'- aGCGGGCGcgGGCAucauugugaauggcGCUAuCGGC-GGCGCg -3'
miRNA:   3'- gCGUCCGU--UUGU--------------UGAU-GCCGuUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 2036 0.73 0.429771
Target:  5'- gCGCAGGCGAuAgAAC-ACGGC--GCGCa -3'
miRNA:   3'- -GCGUCCGUU-UgUUGaUGCCGuuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.