miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26792 3' -51.7 NC_005808.1 + 2036 0.73 0.429771
Target:  5'- gCGCAGGCGAuAgAAC-ACGGC--GCGCa -3'
miRNA:   3'- -GCGUCCGUU-UgUUGaUGCCGuuCGCG- -5'
26792 3' -51.7 NC_005808.1 + 12462 0.73 0.43991
Target:  5'- aCGCGGuGCAGGCcg--GCGGCGuguucuGGCGCg -3'
miRNA:   3'- -GCGUC-CGUUUGuugaUGCCGU------UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 18292 0.72 0.448119
Target:  5'- aGCGGGCcgguGGCGACgguguaauagacACGGCAguagcGGCGCa -3'
miRNA:   3'- gCGUCCGu---UUGUUGa-----------UGCCGU-----UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 40228 0.72 0.449151
Target:  5'- aCGCGGGCGucuGCcacgugcaggccgAAUUGCGGCGcacGCGCg -3'
miRNA:   3'- -GCGUCCGUu--UG-------------UUGAUGCCGUu--CGCG- -5'
26792 3' -51.7 NC_005808.1 + 27891 0.72 0.450184
Target:  5'- gCGCAgGGCAuggaggcGCAACUGCaGGCcgggcuucAAGCGCu -3'
miRNA:   3'- -GCGU-CCGUu------UGUUGAUG-CCG--------UUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 38963 0.72 0.460588
Target:  5'- aCGUGGGguAACGAgUucgGCGGCGugaauGGCGCa -3'
miRNA:   3'- -GCGUCCguUUGUUgA---UGCCGU-----UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 23656 0.72 0.460588
Target:  5'- gGCGGGC-AGCAACUGCacCAGGCGa -3'
miRNA:   3'- gCGUCCGuUUGUUGAUGccGUUCGCg -5'
26792 3' -51.7 NC_005808.1 + 7049 0.72 0.460588
Target:  5'- aGCAGGCGcAUGGCcucggGCGGC-AGCGUc -3'
miRNA:   3'- gCGUCCGUuUGUUGa----UGCCGuUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 13747 0.72 0.471118
Target:  5'- gCGCGGcGCuggGACAGCUuCGGCAAGUccgGCc -3'
miRNA:   3'- -GCGUC-CGu--UUGUUGAuGCCGUUCG---CG- -5'
26792 3' -51.7 NC_005808.1 + 7486 0.72 0.471118
Target:  5'- gCGguGGUAuaggccccuuGCAACUgGCGGCGcGCGCu -3'
miRNA:   3'- -GCguCCGUu---------UGUUGA-UGCCGUuCGCG- -5'
26792 3' -51.7 NC_005808.1 + 19565 0.72 0.471118
Target:  5'- aCGCAGcGCGcAGCAACaagcccaACaGCAGGCGCa -3'
miRNA:   3'- -GCGUC-CGU-UUGUUGa------UGcCGUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 19755 0.72 0.471118
Target:  5'- uCGCAGcGCGcgcuguCGGCUGuCGGC-AGCGCg -3'
miRNA:   3'- -GCGUC-CGUuu----GUUGAU-GCCGuUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 2373 0.72 0.474302
Target:  5'- uGCAcguGGCAGACGcccgcguGCguacccuugucaggGCGGCAAGCGUa -3'
miRNA:   3'- gCGU---CCGUUUGU-------UGa-------------UGCCGUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 186 0.72 0.478562
Target:  5'- uCGCuGGGCAccgucacgcugccgGGCGAC-ACGGCGaacuGGCGCa -3'
miRNA:   3'- -GCG-UCCGU--------------UUGUUGaUGCCGU----UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 19920 0.72 0.48177
Target:  5'- gCGCuGG-GGGCAACUGCGcacCGAGCGCg -3'
miRNA:   3'- -GCGuCCgUUUGUUGAUGCc--GUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 27489 0.72 0.492536
Target:  5'- gGCcuGGUAGGCAGCUauuACGGC--GCGCg -3'
miRNA:   3'- gCGu-CCGUUUGUUGA---UGCCGuuCGCG- -5'
26792 3' -51.7 NC_005808.1 + 22888 0.72 0.492536
Target:  5'- gCGCGGuuGAACGACUGCuGCGAGUcgaGCa -3'
miRNA:   3'- -GCGUCcgUUUGUUGAUGcCGUUCG---CG- -5'
26792 3' -51.7 NC_005808.1 + 31829 0.71 0.503412
Target:  5'- -cCAGGcCGAAgAACUGCGGgccgaaguCGAGCGCg -3'
miRNA:   3'- gcGUCC-GUUUgUUGAUGCC--------GUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 24312 0.71 0.503412
Target:  5'- gGUcGGCGAGCAGCcGCGGguCAGGCGg -3'
miRNA:   3'- gCGuCCGUUUGUUGaUGCC--GUUCGCg -5'
26792 3' -51.7 NC_005808.1 + 37438 0.71 0.514391
Target:  5'- uCGCcaaGGGCGugAGCAGCgACGGCcgccuGCGCg -3'
miRNA:   3'- -GCG---UCCGU--UUGUUGaUGCCGuu---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.