miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26792 3' -51.7 NC_005808.1 + 39737 0.66 0.805216
Target:  5'- uGCAuGGCucuGCcaacGCUACGGCuuGGCGg -3'
miRNA:   3'- gCGU-CCGuu-UGu---UGAUGCCGu-UCGCg -5'
26792 3' -51.7 NC_005808.1 + 1663 0.66 0.805216
Target:  5'- aGCAGGUcuuGCAccucgcgcuuggACUcGCGGCGAGC-Ca -3'
miRNA:   3'- gCGUCCGuu-UGU------------UGA-UGCCGUUCGcG- -5'
26792 3' -51.7 NC_005808.1 + 28026 0.66 0.805216
Target:  5'- cCGCcGGCAu-CAGCc-CGGUAGGgGCg -3'
miRNA:   3'- -GCGuCCGUuuGUUGauGCCGUUCgCG- -5'
26792 3' -51.7 NC_005808.1 + 3800 0.66 0.805216
Target:  5'- gGuCGGGCAGcAUGACcagGCGGUcggGGGCGCc -3'
miRNA:   3'- gC-GUCCGUU-UGUUGa--UGCCG---UUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 30568 0.66 0.804213
Target:  5'- aCGCuGGGCAAGaccucgcCGGCcACGGCc-GCGCu -3'
miRNA:   3'- -GCG-UCCGUUU-------GUUGaUGCCGuuCGCG- -5'
26792 3' -51.7 NC_005808.1 + 10783 0.66 0.802202
Target:  5'- gCGCAGGUucAugGGCUucgccuuucguuaaAUGcGUAGGCGCa -3'
miRNA:   3'- -GCGUCCGu-UugUUGA--------------UGC-CGUUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 5319 0.67 0.784796
Target:  5'- cCGUAGGCcGcgagcacguggcGCAGC-AUGGCAucGCGCu -3'
miRNA:   3'- -GCGUCCGuU------------UGUUGaUGCCGUu-CGCG- -5'
26792 3' -51.7 NC_005808.1 + 9214 0.67 0.784796
Target:  5'- gGCGcGGCGcACGuuCUGCGGC--GCGCc -3'
miRNA:   3'- gCGU-CCGUuUGUu-GAUGCCGuuCGCG- -5'
26792 3' -51.7 NC_005808.1 + 28760 0.67 0.784796
Target:  5'- gGCAGGC--GCAAUUGCugGGCAAaucCGCc -3'
miRNA:   3'- gCGUCCGuuUGUUGAUG--CCGUUc--GCG- -5'
26792 3' -51.7 NC_005808.1 + 6284 0.67 0.781671
Target:  5'- gGCAGGcCGAACAGgUcgcccacgacauugACGGCAgcuuugcggaaAGCGUc -3'
miRNA:   3'- gCGUCC-GUUUGUUgA--------------UGCCGU-----------UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 25767 0.67 0.774318
Target:  5'- uGCuGGGCGgcGGCAACgAUGGCcgcgauGCGCg -3'
miRNA:   3'- gCG-UCCGU--UUGUUGaUGCCGuu----CGCG- -5'
26792 3' -51.7 NC_005808.1 + 21423 0.67 0.774318
Target:  5'- aGCAGGCcgcGCAGCa--GGCc-GCGCu -3'
miRNA:   3'- gCGUCCGuu-UGUUGaugCCGuuCGCG- -5'
26792 3' -51.7 NC_005808.1 + 18038 0.67 0.773261
Target:  5'- uGUcGGCGGGCuGCUugGGgGccuuaccGGCGCg -3'
miRNA:   3'- gCGuCCGUUUGuUGAugCCgU-------UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 4194 0.67 0.773261
Target:  5'- gGCGGGCAuguuggccgcgAGCAcgucgcgGCuUGCGGCuuGCGUa -3'
miRNA:   3'- gCGUCCGU-----------UUGU-------UG-AUGCCGuuCGCG- -5'
26792 3' -51.7 NC_005808.1 + 26839 0.67 0.763677
Target:  5'- uCGCAccauuGGC-GGCAACgaggUGCGGUaugucGAGCGCa -3'
miRNA:   3'- -GCGU-----CCGuUUGUUG----AUGCCG-----UUCGCG- -5'
26792 3' -51.7 NC_005808.1 + 17198 0.67 0.763677
Target:  5'- gGC-GGCAcgGACGGCUACaacucgcaaaagGGCuucuGGCGCc -3'
miRNA:   3'- gCGuCCGU--UUGUUGAUG------------CCGu---UCGCG- -5'
26792 3' -51.7 NC_005808.1 + 37436 0.67 0.752886
Target:  5'- nGguGGCAGGCAA-UGCGGCAAa--- -3'
miRNA:   3'- gCguCCGUUUGUUgAUGCCGUUcgcg -5'
26792 3' -51.7 NC_005808.1 + 16225 0.67 0.752886
Target:  5'- aGCA-GC-AGCAACU-CGGUGAGCGg -3'
miRNA:   3'- gCGUcCGuUUGUUGAuGCCGUUCGCg -5'
26792 3' -51.7 NC_005808.1 + 28477 0.67 0.752886
Target:  5'- cCGCuGGCcGACGAgUACGGCGauaaccucaagaAGCa- -3'
miRNA:   3'- -GCGuCCGuUUGUUgAUGCCGU------------UCGcg -5'
26792 3' -51.7 NC_005808.1 + 2234 0.67 0.752886
Target:  5'- gCGCA-GCAGGCGGCgcgUGGCc-GCGCa -3'
miRNA:   3'- -GCGUcCGUUUGUUGau-GCCGuuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.