Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26792 | 5' | -60 | NC_005808.1 | + | 36123 | 1.14 | 0.000105 |
Target: 5'- cGGGCCUGCGCGGCGUGCAGUUCCUGCg -3' miRNA: 3'- -CCCGGACGCGCCGCACGUCAAGGACG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 37464 | 0.77 | 0.062317 |
Target: 5'- -cGCCUGCGCGGCacguUGCAGUUCaacgGCg -3' miRNA: 3'- ccCGGACGCGCCGc---ACGUCAAGga--CG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 11516 | 0.77 | 0.069868 |
Target: 5'- -cGCCUGCGCuGGCGUG-AGgcCCUGCg -3' miRNA: 3'- ccCGGACGCG-CCGCACgUCaaGGACG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 33204 | 0.77 | 0.07189 |
Target: 5'- cGGCCUGCGCGaCaUGCAGUggCUGCa -3' miRNA: 3'- cCCGGACGCGCcGcACGUCAagGACG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 39062 | 0.75 | 0.092781 |
Target: 5'- cGGGaCUGCGCGGUGUGCGG---CUGUa -3' miRNA: 3'- -CCCgGACGCGCCGCACGUCaagGACG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 6242 | 0.75 | 0.09543 |
Target: 5'- aGGGCCUGCacgcCGGUaacgGUGCGGUUgaUCUGCg -3' miRNA: 3'- -CCCGGACGc---GCCG----CACGUCAA--GGACG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 14899 | 0.74 | 0.114151 |
Target: 5'- aGGGUCUGCGCGGCGaucUGCugcuggccggccucaAGUgccgaCUGCg -3' miRNA: 3'- -CCCGGACGCGCCGC---ACG---------------UCAag---GACG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 15131 | 0.73 | 0.138522 |
Target: 5'- uGGuGCgUGCGCGGCGcGCuggcauaccagcgccAGggCCUGCg -3' miRNA: 3'- -CC-CGgACGCGCCGCaCG---------------UCaaGGACG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 22881 | 0.72 | 0.152841 |
Target: 5'- aGGGCgaUGCGCGGCGccucuaUGCAGcUUCCa-- -3' miRNA: 3'- -CCCGg-ACGCGCCGC------ACGUC-AAGGacg -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 9201 | 0.72 | 0.152841 |
Target: 5'- uGGCCUGCuCGGCGgcGCGGcgcacgUUCUGCg -3' miRNA: 3'- cCCGGACGcGCCGCa-CGUCa-----AGGACG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 8331 | 0.71 | 0.174486 |
Target: 5'- gGGGaaagUUGCGCGuGCGUGCucaugccAGUaccUCCUGCg -3' miRNA: 3'- -CCCg---GACGCGC-CGCACG-------UCA---AGGACG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 8143 | 0.71 | 0.199874 |
Target: 5'- uGGGCgUGCGgguguCGGCGcUGC-GUcCCUGCg -3' miRNA: 3'- -CCCGgACGC-----GCCGC-ACGuCAaGGACG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 12576 | 0.71 | 0.199874 |
Target: 5'- gGGGCaccaaggGCGCGGcCGUGCAGUUggaGCa -3' miRNA: 3'- -CCCGga-----CGCGCC-GCACGUCAAggaCG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 14345 | 0.7 | 0.216268 |
Target: 5'- cGGGCCUGC-UGGUucGCGGUgUCCUGg -3' miRNA: 3'- -CCCGGACGcGCCGcaCGUCA-AGGACg -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 11423 | 0.7 | 0.216268 |
Target: 5'- cGGCgaGC-CGGCGUGCAGgucgCCgauaagGCg -3' miRNA: 3'- cCCGgaCGcGCCGCACGUCaa--GGa-----CG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 15310 | 0.7 | 0.227826 |
Target: 5'- -aGCCUucgccaaggcGCGCGGCGaacUGCGGUUCaUUGCc -3' miRNA: 3'- ccCGGA----------CGCGCCGC---ACGUCAAG-GACG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 32922 | 0.69 | 0.239903 |
Target: 5'- cGGCCUGCaCGGCG-GCuGUUCg-GCc -3' miRNA: 3'- cCCGGACGcGCCGCaCGuCAAGgaCG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 35376 | 0.69 | 0.259015 |
Target: 5'- aGGGUgaGCGCGGC--GCAGaUgCUGCc -3' miRNA: 3'- -CCCGgaCGCGCCGcaCGUCaAgGACG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 18055 | 0.69 | 0.259015 |
Target: 5'- gGGGCCUuaccgGCGCGGgGUGCGugcuGggCC-GCc -3' miRNA: 3'- -CCCGGA-----CGCGCCgCACGU----CaaGGaCG- -5' |
|||||||
26792 | 5' | -60 | NC_005808.1 | + | 21179 | 0.69 | 0.259015 |
Target: 5'- cGGCCugcUGCGCGGCcUGCuGcuggUCUGCg -3' miRNA: 3'- cCCGG---ACGCGCCGcACGuCaa--GGACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home