Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26792 | 5' | -60 | NC_005808.1 | + | 448 | 0.67 | 0.323793 |
Target: 5'- uGGGCUgcUGCGCGGCcagcuUGCGGgcgCUGUc -3' miRNA: 3'- -CCCGG--ACGCGCCGc----ACGUCaagGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 938 | 0.68 | 0.292878 |
Target: 5'- gGGGCCgaucuguccguccUGCGCGGUGcccacgGCAG--CUUGCa -3' miRNA: 3'- -CCCGG-------------ACGCGCCGCa-----CGUCaaGGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 1882 | 0.67 | 0.347914 |
Target: 5'- uGGCCgGCGCuggccgggugGGCGaacaGCAGcgggauuuUUCCUGCg -3' miRNA: 3'- cCCGGaCGCG----------CCGCa---CGUC--------AAGGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 6242 | 0.75 | 0.09543 |
Target: 5'- aGGGCCUGCacgcCGGUaacgGUGCGGUUgaUCUGCg -3' miRNA: 3'- -CCCGGACGc---GCCG----CACGUCAA--GGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 7254 | 0.66 | 0.399896 |
Target: 5'- cGGGCCgaUGuCGcCGGCcuuGUGCAGcUUCUcgGCg -3' miRNA: 3'- -CCCGG--AC-GC-GCCG---CACGUC-AAGGa-CG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 8143 | 0.71 | 0.199874 |
Target: 5'- uGGGCgUGCGgguguCGGCGcUGC-GUcCCUGCg -3' miRNA: 3'- -CCCGgACGC-----GCCGC-ACGuCAaGGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 8331 | 0.71 | 0.174486 |
Target: 5'- gGGGaaagUUGCGCGuGCGUGCucaugccAGUaccUCCUGCg -3' miRNA: 3'- -CCCg---GACGCGC-CGCACG-------UCA---AGGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 9201 | 0.72 | 0.152841 |
Target: 5'- uGGCCUGCuCGGCGgcGCGGcgcacgUUCUGCg -3' miRNA: 3'- cCCGGACGcGCCGCa-CGUCa-----AGGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 10239 | 0.67 | 0.339733 |
Target: 5'- gGGGCCUcgGCGGCGaccGCAGcgaCCUGg -3' miRNA: 3'- -CCCGGAcgCGCCGCa--CGUCaa-GGACg -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 10886 | 0.66 | 0.399896 |
Target: 5'- -aGCCcgcGCGCGGCGggcuggucagGCGGUg-CUGCa -3' miRNA: 3'- ccCGGa--CGCGCCGCa---------CGUCAagGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 11423 | 0.7 | 0.216268 |
Target: 5'- cGGCgaGC-CGGCGUGCAGgucgCCgauaagGCg -3' miRNA: 3'- cCCGgaCGcGCCGCACGUCaa--GGa-----CG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 11516 | 0.77 | 0.069868 |
Target: 5'- -cGCCUGCGCuGGCGUG-AGgcCCUGCg -3' miRNA: 3'- ccCGGACGCG-CCGCACgUCaaGGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 12576 | 0.71 | 0.199874 |
Target: 5'- gGGGCaccaaggGCGCGGcCGUGCAGUUggaGCa -3' miRNA: 3'- -CCCGga-----CGCGCC-GCACGUCAAggaCG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 13459 | 0.66 | 0.40903 |
Target: 5'- cGGCCUcggGCGCGGUGU-CGGgcaugaCCUGg -3' miRNA: 3'- cCCGGA---CGCGCCGCAcGUCaa----GGACg -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 13479 | 0.67 | 0.323793 |
Target: 5'- cGGCCUcGCGCGcGUGaccgGCAGcaagUCCcGCa -3' miRNA: 3'- cCCGGA-CGCGC-CGCa---CGUCa---AGGaCG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 14345 | 0.7 | 0.216268 |
Target: 5'- cGGGCCUGC-UGGUucGCGGUgUCCUGg -3' miRNA: 3'- -CCCGGACGcGCCGcaCGUCA-AGGACg -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 14811 | 0.68 | 0.286408 |
Target: 5'- cGG-CUGCGCGGCGcGCGcUUCgUGUa -3' miRNA: 3'- cCCgGACGCGCCGCaCGUcAAGgACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 14899 | 0.74 | 0.114151 |
Target: 5'- aGGGUCUGCGCGGCGaucUGCugcuggccggccucaAGUgccgaCUGCg -3' miRNA: 3'- -CCCGGACGCGCCGC---ACG---------------UCAag---GACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 15131 | 0.73 | 0.138522 |
Target: 5'- uGGuGCgUGCGCGGCGcGCuggcauaccagcgccAGggCCUGCg -3' miRNA: 3'- -CC-CGgACGCGCCGCaCG---------------UCaaGGACG- -5' |
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26792 | 5' | -60 | NC_005808.1 | + | 15310 | 0.7 | 0.227826 |
Target: 5'- -aGCCUucgccaaggcGCGCGGCGaacUGCGGUUCaUUGCc -3' miRNA: 3'- ccCGGA----------CGCGCCGC---ACGUCAAG-GACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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