miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26794 3' -58.8 NC_005808.1 + 6352 0.74 0.145829
Target:  5'- gCGCCcgGCCCGAagg-CCGg-GGCGCu -3'
miRNA:   3'- -GCGGuaCGGGCUgauaGGCgaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 8718 0.67 0.377494
Target:  5'- uGCCgaacacgaagauGUGCCCGGCggg-CGC-GGCGCu -3'
miRNA:   3'- gCGG------------UACGGGCUGauagGCGaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 2107 0.67 0.404445
Target:  5'- uCGCCGUGUCgucgguauaGAUUGcgCCGUUGGCGa -3'
miRNA:   3'- -GCGGUACGGg--------CUGAUa-GGCGACCGCg -5'
26794 3' -58.8 NC_005808.1 + 23233 0.65 0.477839
Target:  5'- gGCCcUGgCCGACcucaacggcaauUCCGCcgccUGGCGCc -3'
miRNA:   3'- gCGGuACgGGCUGau----------AGGCG----ACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 41980 0.71 0.21265
Target:  5'- aCGCCGUGuCCaCGGCg--CUGCUGGC-Cg -3'
miRNA:   3'- -GCGGUAC-GG-GCUGauaGGCGACCGcG- -5'
26794 3' -58.8 NC_005808.1 + 18924 0.7 0.242276
Target:  5'- uGUCcgGCCCGACcgagggUCGcCUGGUGCa -3'
miRNA:   3'- gCGGuaCGGGCUGaua---GGC-GACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 16467 0.69 0.296723
Target:  5'- gCGCCAaaucUGCCgCGACgaacacaugCCGgcaUGGCGCa -3'
miRNA:   3'- -GCGGU----ACGG-GCUGaua------GGCg--ACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 1757 0.69 0.304161
Target:  5'- gGUCAUGgCCGGCc-UgCGcCUGGCGCg -3'
miRNA:   3'- gCGGUACgGGCUGauAgGC-GACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 9008 0.68 0.343486
Target:  5'- gGCCGUGCCgGAUUcgCCaGCggUGGcCGUg -3'
miRNA:   3'- gCGGUACGGgCUGAuaGG-CG--ACC-GCG- -5'
26794 3' -58.8 NC_005808.1 + 18684 0.68 0.368783
Target:  5'- aCGCCuAUG-CCGGCaUGgaagCCGCgGGCGUg -3'
miRNA:   3'- -GCGG-UACgGGCUG-AUa---GGCGaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 2726 0.68 0.355134
Target:  5'- gGCCGgacgcuugagcgcgGCCCGGCg--CUGCUcgGGCGUg -3'
miRNA:   3'- gCGGUa-------------CGGGCUGauaGGCGA--CCGCG- -5'
26794 3' -58.8 NC_005808.1 + 8943 0.68 0.343486
Target:  5'- gGCCGUGCCgGAUUcgCCaGCggUGGcCGUg -3'
miRNA:   3'- gCGGUACGGgCUGAuaGG-CG--ACC-GCG- -5'
26794 3' -58.8 NC_005808.1 + 37911 0.73 0.171746
Target:  5'- gGCCAUucuCgCCGGCUAUCCggcgcGCUGGUGCc -3'
miRNA:   3'- gCGGUAc--G-GGCUGAUAGG-----CGACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 9392 0.68 0.36021
Target:  5'- gGCCGUGCCgCGAUagccagcggUggCCGUgccgagGGCGCc -3'
miRNA:   3'- gCGGUACGG-GCUG---------AuaGGCGa-----CCGCG- -5'
26794 3' -58.8 NC_005808.1 + 15160 0.72 0.181261
Target:  5'- gCGCCAggGCCUG-Cgg-CCGCcgGGCGCg -3'
miRNA:   3'- -GCGGUa-CGGGCuGauaGGCGa-CCGCG- -5'
26794 3' -58.8 NC_005808.1 + 5101 0.69 0.311741
Target:  5'- gGCCG-GCCCaGC-GUCCggugcgGCUGGCGCc -3'
miRNA:   3'- gCGGUaCGGGcUGaUAGG------CGACCGCG- -5'
26794 3' -58.8 NC_005808.1 + 29302 0.68 0.36021
Target:  5'- aCGCCGgcCCCGGCgcgCUGCaaucGGCGCu -3'
miRNA:   3'- -GCGGUacGGGCUGauaGGCGa---CCGCG- -5'
26794 3' -58.8 NC_005808.1 + 19484 0.67 0.395327
Target:  5'- aGCCGUuaCCG-CUGUcgCCGUgGGCGCc -3'
miRNA:   3'- gCGGUAcgGGCuGAUA--GGCGaCCGCG- -5'
26794 3' -58.8 NC_005808.1 + 29135 0.71 0.21265
Target:  5'- gGUCAUGCCCGACaccgcgCCcgaggccgccaaGCUGGCGg -3'
miRNA:   3'- gCGGUACGGGCUGaua---GG------------CGACCGCg -5'
26794 3' -58.8 NC_005808.1 + 14884 0.69 0.289428
Target:  5'- aGuCCAUGaCCGGCggcgagCCGCUgccGGCGCg -3'
miRNA:   3'- gC-GGUACgGGCUGaua---GGCGA---CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.