Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26794 | 3' | -58.8 | NC_005808.1 | + | 12449 | 0.67 | 0.421189 |
Target: 5'- cCGCUgAUGUCCGACgcggugcaggCCGgcggcguguuCUGGCGCg -3' miRNA: 3'- -GCGG-UACGGGCUGaua-------GGC----------GACCGCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 24422 | 0.67 | 0.413696 |
Target: 5'- aGCCG-GCCCGAuUUGUCgGUgccGCGCg -3' miRNA: 3'- gCGGUaCGGGCU-GAUAGgCGac-CGCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 2107 | 0.67 | 0.404445 |
Target: 5'- uCGCCGUGUCgucgguauaGAUUGcgCCGUUGGCGa -3' miRNA: 3'- -GCGGUACGGg--------CUGAUa-GGCGACCGCg -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 8363 | 0.67 | 0.395327 |
Target: 5'- gGCCGggaUGUCCGGCUcgaacccggccUCgCGCUGGCuGCg -3' miRNA: 3'- gCGGU---ACGGGCUGAu----------AG-GCGACCG-CG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 19484 | 0.67 | 0.395327 |
Target: 5'- aGCCGUuaCCG-CUGUcgCCGUgGGCGCc -3' miRNA: 3'- gCGGUAcgGGCuGAUA--GGCGaCCGCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 6396 | 0.67 | 0.391717 |
Target: 5'- gGCCGgccgGCCCgGugUAgucgcggcccaugUCGUUGGCGCc -3' miRNA: 3'- gCGGUa---CGGG-CugAUa------------GGCGACCGCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 20727 | 0.67 | 0.377494 |
Target: 5'- -cCCAUcaGgCCGACaugCUGCUGGCGCc -3' miRNA: 3'- gcGGUA--CgGGCUGauaGGCGACCGCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 8718 | 0.67 | 0.377494 |
Target: 5'- uGCCgaacacgaagauGUGCCCGGCggg-CGC-GGCGCu -3' miRNA: 3'- gCGG------------UACGGGCUGauagGCGaCCGCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 18684 | 0.68 | 0.368783 |
Target: 5'- aCGCCuAUG-CCGGCaUGgaagCCGCgGGCGUg -3' miRNA: 3'- -GCGG-UACgGGCUG-AUa---GGCGaCCGCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 9392 | 0.68 | 0.36021 |
Target: 5'- gGCCGUGCCgCGAUagccagcggUggCCGUgccgagGGCGCc -3' miRNA: 3'- gCGGUACGG-GCUG---------AuaGGCGa-----CCGCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 9492 | 0.68 | 0.36021 |
Target: 5'- gCGUCAUGCCaGcCUGuUCCGCcgUGGCGa -3' miRNA: 3'- -GCGGUACGGgCuGAU-AGGCG--ACCGCg -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 29302 | 0.68 | 0.36021 |
Target: 5'- aCGCCGgcCCCGGCgcgCUGCaaucGGCGCu -3' miRNA: 3'- -GCGGUacGGGCUGauaGGCGa---CCGCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 2726 | 0.68 | 0.355134 |
Target: 5'- gGCCGgacgcuugagcgcgGCCCGGCg--CUGCUcgGGCGUg -3' miRNA: 3'- gCGGUa-------------CGGGCUGauaGGCGA--CCGCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 9008 | 0.68 | 0.343486 |
Target: 5'- gGCCGUGCCgGAUUcgCCaGCggUGGcCGUg -3' miRNA: 3'- gCGGUACGGgCUGAuaGG-CG--ACC-GCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 9056 | 0.68 | 0.343486 |
Target: 5'- gGCCGUGCCgGAUUcgCCaGCggUGGcCGUg -3' miRNA: 3'- gCGGUACGGgCUGAuaGG-CG--ACC-GCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 8943 | 0.68 | 0.343486 |
Target: 5'- gGCCGUGCCgGAUUcgCCaGCggUGGcCGUg -3' miRNA: 3'- gCGGUACGGgCUGAuaGG-CG--ACC-GCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 22814 | 0.68 | 0.342665 |
Target: 5'- uGCCGgacugGCCCGACUucgCCGCgcUGccgacagccgacaGCGCg -3' miRNA: 3'- gCGGUa----CGGGCUGAua-GGCG--AC-------------CGCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 25212 | 0.68 | 0.335336 |
Target: 5'- cCGCUG-GCCCGGCU---UGUUGGUGCg -3' miRNA: 3'- -GCGGUaCGGGCUGAuagGCGACCGCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 3176 | 0.69 | 0.311741 |
Target: 5'- uGgCAaGCCCGGC-GUCCGCUG-CGUa -3' miRNA: 3'- gCgGUaCGGGCUGaUAGGCGACcGCG- -5' |
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26794 | 3' | -58.8 | NC_005808.1 | + | 5101 | 0.69 | 0.311741 |
Target: 5'- gGCCG-GCCCaGC-GUCCggugcgGCUGGCGCc -3' miRNA: 3'- gCGGUaCGGGcUGaUAGG------CGACCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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