miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26796 3' -52.5 NC_005808.1 + 6640 0.67 0.789974
Target:  5'- cGCGCgCUUGGCCGGAgUGUCcGCGcucauggucugcGCCa -3'
miRNA:   3'- -CGUG-GAGCUGGUCUgGUAGuUGC------------UGG- -5'
26796 3' -52.5 NC_005808.1 + 23904 0.67 0.789974
Target:  5'- cGCugCUgcUGACCgAGGCCcgCGugGugUa -3'
miRNA:   3'- -CGugGA--GCUGG-UCUGGuaGUugCugG- -5'
26796 3' -52.5 NC_005808.1 + 18656 0.67 0.789974
Target:  5'- -gACCUCGccgggcgugcGCCuGACCAUCA-CG-CCu -3'
miRNA:   3'- cgUGGAGC----------UGGuCUGGUAGUuGCuGG- -5'
26796 3' -52.5 NC_005808.1 + 7234 0.67 0.789974
Target:  5'- uGCaACUUCGGCCacuggcgcGGGCCGaugUCGcCGGCCu -3'
miRNA:   3'- -CG-UGGAGCUGG--------UCUGGU---AGUuGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 16107 0.67 0.789974
Target:  5'- -gACCaCGACCGGcuGCaCGUCggUGGCCc -3'
miRNA:   3'- cgUGGaGCUGGUC--UG-GUAGuuGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 27421 0.67 0.789974
Target:  5'- cGCGCCUggCGcACCGcGCC--CGGCGGCCg -3'
miRNA:   3'- -CGUGGA--GC-UGGUcUGGuaGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 38247 0.67 0.788968
Target:  5'- cGCACCggcaacgcaaCGGCCAGcaucaaggcuggcACCAUCGugGAg- -3'
miRNA:   3'- -CGUGGa---------GCUGGUC-------------UGGUAGUugCUgg -5'
26796 3' -52.5 NC_005808.1 + 28550 0.67 0.779837
Target:  5'- -gACCUugCGGCCGccGGCCAUC-GCGGCg -3'
miRNA:   3'- cgUGGA--GCUGGU--CUGGUAGuUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 15758 0.67 0.779837
Target:  5'- cGCACCUCGuuGCCGccaauggugcGACgCA-CGACGGCa -3'
miRNA:   3'- -CGUGGAGC--UGGU----------CUG-GUaGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 14255 0.67 0.779837
Target:  5'- cGCGCUgcccgacgaGGCCaAGGCCAUCGAgucCGACg -3'
miRNA:   3'- -CGUGGag-------CUGG-UCUGGUAGUU---GCUGg -5'
26796 3' -52.5 NC_005808.1 + 1450 0.67 0.779837
Target:  5'- aCACCUucuUGACgGcGCgGUCGGCGGCCu -3'
miRNA:   3'- cGUGGA---GCUGgUcUGgUAGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 21746 0.67 0.779837
Target:  5'- cGCGCCgUCGugCAGucggucaguuCCcgCGAUGACg -3'
miRNA:   3'- -CGUGG-AGCugGUCu---------GGuaGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 34372 0.67 0.779837
Target:  5'- aGCugCUgaCGGCCGccGACCAgc-GCGACUa -3'
miRNA:   3'- -CGugGA--GCUGGU--CUGGUaguUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 25792 0.67 0.778814
Target:  5'- uGCGCCgccugggcgCGACCAacuggcaacuggcGACCAUCGccuucACGucGCCg -3'
miRNA:   3'- -CGUGGa--------GCUGGU-------------CUGGUAGU-----UGC--UGG- -5'
26796 3' -52.5 NC_005808.1 + 24309 0.67 0.769538
Target:  5'- aCACCgUCGccACCGGcCCGcUGACGGCCg -3'
miRNA:   3'- cGUGG-AGC--UGGUCuGGUaGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 11581 0.67 0.769538
Target:  5'- -uGCCUCGGCCGGcaaGCC--CGugGACa -3'
miRNA:   3'- cgUGGAGCUGGUC---UGGuaGUugCUGg -5'
26796 3' -52.5 NC_005808.1 + 38317 0.67 0.766419
Target:  5'- uCACCgcCGACaCGG-CCAUCAccaugccggcgcugACGGCCg -3'
miRNA:   3'- cGUGGa-GCUG-GUCuGGUAGU--------------UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 17292 0.67 0.759091
Target:  5'- aGCGCCggUGGCaGGGCCGgccgC-ACGACCu -3'
miRNA:   3'- -CGUGGa-GCUGgUCUGGUa---GuUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 27295 0.67 0.759091
Target:  5'- cGCGCCUUGGCgaAGGCUucccaCGACGcCCa -3'
miRNA:   3'- -CGUGGAGCUGg-UCUGGua---GUUGCuGG- -5'
26796 3' -52.5 NC_005808.1 + 32852 0.67 0.759091
Target:  5'- uCGCCU-GGCCgcAGACgGUCGGCG-CCg -3'
miRNA:   3'- cGUGGAgCUGG--UCUGgUAGUUGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.