Results 21 - 40 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26796 | 3' | -52.5 | NC_005808.1 | + | 37734 | 0.66 | 0.819304 |
Target: 5'- cGCGCUgggcaaCGACCuGACCgggcaaccuaugGUCAucgacuacgGCGACCu -3' miRNA: 3'- -CGUGGa-----GCUGGuCUGG------------UAGU---------UGCUGG- -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 34980 | 0.66 | 0.819304 |
Target: 5'- cGCGCCc---CCuGACCAUCAccACGGCa -3' miRNA: 3'- -CGUGGagcuGGuCUGGUAGU--UGCUGg -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 18081 | 0.66 | 0.819304 |
Target: 5'- cCACCUgGACguGAUCggCGugGGCg -3' miRNA: 3'- cGUGGAgCUGguCUGGuaGUugCUGg -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 26886 | 0.66 | 0.819304 |
Target: 5'- cGCGCCaguUCGAugcCCAGGCggacgccuucuuCGUCGauaGCGGCCu -3' miRNA: 3'- -CGUGG---AGCU---GGUCUG------------GUAGU---UGCUGG- -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 4434 | 0.66 | 0.818355 |
Target: 5'- cGCGCCagGgggaagccGCCAGcgguggcACCGUCAugcacaACGACCg -3' miRNA: 3'- -CGUGGagC--------UGGUC-------UGGUAGU------UGCUGG- -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 36209 | 0.66 | 0.818355 |
Target: 5'- aCACCgggcCGGCCGGccugcgccugauuGCCGaCGugGGCCg -3' miRNA: 3'- cGUGGa---GCUGGUC-------------UGGUaGUugCUGG- -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 37657 | 0.66 | 0.809719 |
Target: 5'- -aACCUcgcagaCGugCAGACCGUC-GCGGgCa -3' miRNA: 3'- cgUGGA------GCugGUCUGGUAGuUGCUgG- -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 31546 | 0.66 | 0.809719 |
Target: 5'- aGCAgUUCGucGCCAaugcGGCCGagAACGGCCc -3' miRNA: 3'- -CGUgGAGC--UGGU----CUGGUagUUGCUGG- -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 2247 | 0.66 | 0.809719 |
Target: 5'- cGgGCCUUGGCCGG-CaguUCGACGcgcACCa -3' miRNA: 3'- -CgUGGAGCUGGUCuGgu-AGUUGC---UGG- -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 32741 | 0.66 | 0.809719 |
Target: 5'- cGCGCCgguGCCAcGCuCAUCGACG-CCg -3' miRNA: 3'- -CGUGGagcUGGUcUG-GUAGUUGCuGG- -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 32796 | 0.66 | 0.809719 |
Target: 5'- cGCugCUUGACUGGuuCggCGugcGCGACCu -3' miRNA: 3'- -CGugGAGCUGGUCugGuaGU---UGCUGG- -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 37302 | 0.66 | 0.809719 |
Target: 5'- -gGCCUCGaccuGCCAGACaugcagcaAUCGACG-CUg -3' miRNA: 3'- cgUGGAGC----UGGUCUGg-------UAGUUGCuGG- -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 23233 | 0.66 | 0.809719 |
Target: 5'- -gGCCcUGGCC-GACC-UCAACGGCa -3' miRNA: 3'- cgUGGaGCUGGuCUGGuAGUUGCUGg -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 14824 | 0.66 | 0.80875 |
Target: 5'- cGCGCUUCGuguacguguccgaGCCGGACgAgggCAGCGAg- -3' miRNA: 3'- -CGUGGAGC-------------UGGUCUGgUa--GUUGCUgg -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 4579 | 0.66 | 0.806805 |
Target: 5'- cGCugCUCGgugcGCCAGGCgAggaacugcucggccUCGGCGAUg -3' miRNA: 3'- -CGugGAGC----UGGUCUGgU--------------AGUUGCUGg -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 27744 | 0.66 | 0.799939 |
Target: 5'- gGCGCCcagCGugCGGcgcugGCCGcCAACGGCa -3' miRNA: 3'- -CGUGGa--GCugGUC-----UGGUaGUUGCUGg -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 33874 | 0.66 | 0.799939 |
Target: 5'- cGCGCC-CG-CCGGGCaCAUCuuCGugUu -3' miRNA: 3'- -CGUGGaGCuGGUCUG-GUAGuuGCugG- -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 32886 | 0.66 | 0.799939 |
Target: 5'- cGCGCC-CGACUGGAaggaCAaCAagaacuGCGGCCa -3' miRNA: 3'- -CGUGGaGCUGGUCUg---GUaGU------UGCUGG- -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 7234 | 0.67 | 0.789974 |
Target: 5'- uGCaACUUCGGCCacuggcgcGGGCCGaugUCGcCGGCCu -3' miRNA: 3'- -CG-UGGAGCUGG--------UCUGGU---AGUuGCUGG- -5' |
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26796 | 3' | -52.5 | NC_005808.1 | + | 26937 | 0.67 | 0.789974 |
Target: 5'- cGUA-CUCGgggaGCCGGuaaGCCAuaUCAGCGGCCu -3' miRNA: 3'- -CGUgGAGC----UGGUC---UGGU--AGUUGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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