miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26796 3' -52.5 NC_005808.1 + 7731 0.68 0.737799
Target:  5'- cGCACgCUCGgcgGCCGGcuuGCUGUUGGCGACg -3'
miRNA:   3'- -CGUG-GAGC---UGGUC---UGGUAGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 8283 0.76 0.30866
Target:  5'- cGCACgcuaUCGACCAGGCCGcggaauucuUCAACGGUCa -3'
miRNA:   3'- -CGUGg---AGCUGGUCUGGU---------AGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 8392 0.67 0.754873
Target:  5'- cGCGCUggcugcguagccagUCGGCCAgGGCCGUgCGcuugucuACGGCCu -3'
miRNA:   3'- -CGUGG--------------AGCUGGU-CUGGUA-GU-------UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 9187 0.7 0.615296
Target:  5'- gGCGCCgUCGACguuGGCCugcUCGGCGGCg -3'
miRNA:   3'- -CGUGG-AGCUGgu-CUGGu--AGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 9599 0.66 0.836936
Target:  5'- cGCACCUCGGgCGugaguucGACguUCAG-GGCCu -3'
miRNA:   3'- -CGUGGAGCUgGU-------CUGguAGUUgCUGG- -5'
26796 3' -52.5 NC_005808.1 + 9740 0.75 0.324619
Target:  5'- -aAUCUCGGCgCcGACCGUCuGCGGCCa -3'
miRNA:   3'- cgUGGAGCUG-GuCUGGUAGuUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 9765 0.77 0.264405
Target:  5'- uCGCCUCGAaguCCAGAUCGUUccacGCGGCCa -3'
miRNA:   3'- cGUGGAGCU---GGUCUGGUAGu---UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 9884 0.68 0.693971
Target:  5'- uGCuuCUCGGCCAGGCgCGU-GGCGAUg -3'
miRNA:   3'- -CGugGAGCUGGUCUG-GUAgUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 9994 0.66 0.835118
Target:  5'- gGC-CCUUGACgCGGGCCAgcuuggucacagcgUCGGCGGuguCCu -3'
miRNA:   3'- -CGuGGAGCUG-GUCUGGU--------------AGUUGCU---GG- -5'
26796 3' -52.5 NC_005808.1 + 10241 0.79 0.186245
Target:  5'- -gGCCUCGGCgGcGACCG-CAGCGACCu -3'
miRNA:   3'- cgUGGAGCUGgU-CUGGUaGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 10300 0.72 0.498485
Target:  5'- aGCACCUCGgggugccacuucGCCAGuuucgccaggccguaGCCGUCGcuGCGGCg -3'
miRNA:   3'- -CGUGGAGC------------UGGUC---------------UGGUAGU--UGCUGg -5'
26796 3' -52.5 NC_005808.1 + 10609 0.68 0.716059
Target:  5'- uGCACCgcauaGAaauuCCcGACCAUCGACGAa- -3'
miRNA:   3'- -CGUGGag---CU----GGuCUGGUAGUUGCUgg -5'
26796 3' -52.5 NC_005808.1 + 10682 0.68 0.737799
Target:  5'- aGCGCCUCGaaacGCCGcaggcacucGGCC-UCGAUGGCg -3'
miRNA:   3'- -CGUGGAGC----UGGU---------CUGGuAGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 10758 0.69 0.626574
Target:  5'- gGCGCgCUCGACUucGGCCcgCAGuucuuCGGCCu -3'
miRNA:   3'- -CGUG-GAGCUGGu-CUGGuaGUU-----GCUGG- -5'
26796 3' -52.5 NC_005808.1 + 11029 0.73 0.413375
Target:  5'- aCACCUgcUGcACCGGGCCGUUcuCGGCCg -3'
miRNA:   3'- cGUGGA--GC-UGGUCUGGUAGuuGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 11382 0.69 0.660398
Target:  5'- gGCACCUcgguggCGACCugauGGGCCAgggucuugagCAGCGGCg -3'
miRNA:   3'- -CGUGGA------GCUGG----UCUGGUa---------GUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 11581 0.67 0.769538
Target:  5'- -uGCCUCGGCCGGcaaGCC--CGugGACa -3'
miRNA:   3'- cgUGGAGCUGGUC---UGGuaGUugCUGg -5'
26796 3' -52.5 NC_005808.1 + 12095 0.72 0.504873
Target:  5'- cCACCUCGugCucaACC-UCGACGACUu -3'
miRNA:   3'- cGUGGAGCugGuc-UGGuAGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 13155 0.72 0.47331
Target:  5'- uGCGCCUCGAUgucGGCCAguguCGGCCg -3'
miRNA:   3'- -CGUGGAGCUGgu-CUGGUaguuGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 14255 0.67 0.779837
Target:  5'- cGCGCUgcccgacgaGGCCaAGGCCAUCGAgucCGACg -3'
miRNA:   3'- -CGUGGag-------CUGG-UCUGGUAGUU---GCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.