miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26796 3' -52.5 NC_005808.1 + 32886 0.66 0.799939
Target:  5'- cGCGCC-CGACUGGAaggaCAaCAagaacuGCGGCCa -3'
miRNA:   3'- -CGUGGaGCUGGUCUg---GUaGU------UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 7353 0.66 0.837842
Target:  5'- cGCgGCCUCGACCucGGCgucguuCGUCcAGCGGCg -3'
miRNA:   3'- -CG-UGGAGCUGGu-CUG------GUAG-UUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 24195 0.66 0.825891
Target:  5'- cCACCuUCGccgacguggccgccACCGGcGCCAUCGGCaaGGCCa -3'
miRNA:   3'- cGUGG-AGC--------------UGGUC-UGGUAGUUG--CUGG- -5'
26796 3' -52.5 NC_005808.1 + 32741 0.66 0.809719
Target:  5'- cGCGCCgguGCCAcGCuCAUCGACG-CCg -3'
miRNA:   3'- -CGUGGagcUGGUcUG-GUAGUUGCuGG- -5'
26796 3' -52.5 NC_005808.1 + 27744 0.66 0.799939
Target:  5'- gGCGCCcagCGugCGGcgcugGCCGcCAACGGCa -3'
miRNA:   3'- -CGUGGa--GCugGUC-----UGGUaGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 2028 0.66 0.837842
Target:  5'- aGCACCggcauACCGG-CCGccUCGGCGACg -3'
miRNA:   3'- -CGUGGagc--UGGUCuGGU--AGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 23233 0.66 0.809719
Target:  5'- -gGCCcUGGCC-GACC-UCAACGGCa -3'
miRNA:   3'- cgUGGaGCUGGuCUGGuAGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 31546 0.66 0.809719
Target:  5'- aGCAgUUCGucGCCAaugcGGCCGagAACGGCCc -3'
miRNA:   3'- -CGUgGAGC--UGGU----CUGGUagUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 33483 0.66 0.828682
Target:  5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3'
miRNA:   3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 37734 0.66 0.819304
Target:  5'- cGCGCUgggcaaCGACCuGACCgggcaaccuaugGUCAucgacuacgGCGACCu -3'
miRNA:   3'- -CGUGGa-----GCUGGuCUGG------------UAGU---------UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 14824 0.66 0.80875
Target:  5'- cGCGCUUCGuguacguguccgaGCCGGACgAgggCAGCGAg- -3'
miRNA:   3'- -CGUGGAGC-------------UGGUCUGgUa--GUUGCUgg -5'
26796 3' -52.5 NC_005808.1 + 83 0.66 0.837842
Target:  5'- -uGCCUCGAagcgagccauuuCCAGAUCGUUcuGCGcGCCg -3'
miRNA:   3'- cgUGGAGCU------------GGUCUGGUAGu-UGC-UGG- -5'
26796 3' -52.5 NC_005808.1 + 16816 0.66 0.828682
Target:  5'- cGCGCCgcgCGcAUCGcGGCCAUCGuuGCcGCCg -3'
miRNA:   3'- -CGUGGa--GC-UGGU-CUGGUAGU--UGcUGG- -5'
26796 3' -52.5 NC_005808.1 + 9994 0.66 0.835118
Target:  5'- gGC-CCUUGACgCGGGCCAgcuuggucacagcgUCGGCGGuguCCu -3'
miRNA:   3'- -CGuGGAGCUG-GUCUGGU--------------AGUUGCU---GG- -5'
26796 3' -52.5 NC_005808.1 + 4579 0.66 0.806805
Target:  5'- cGCugCUCGgugcGCCAGGCgAggaacugcucggccUCGGCGAUg -3'
miRNA:   3'- -CGugGAGC----UGGUCUGgU--------------AGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 37657 0.66 0.809719
Target:  5'- -aACCUcgcagaCGugCAGACCGUC-GCGGgCa -3'
miRNA:   3'- cgUGGA------GCugGUCUGGUAGuUGCUgG- -5'
26796 3' -52.5 NC_005808.1 + 36209 0.66 0.818355
Target:  5'- aCACCgggcCGGCCGGccugcgccugauuGCCGaCGugGGCCg -3'
miRNA:   3'- cGUGGa---GCUGGUC-------------UGGUaGUugCUGG- -5'
26796 3' -52.5 NC_005808.1 + 32796 0.66 0.809719
Target:  5'- cGCugCUUGACUGGuuCggCGugcGCGACCu -3'
miRNA:   3'- -CGugGAGCUGGUCugGuaGU---UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 1450 0.67 0.779837
Target:  5'- aCACCUucuUGACgGcGCgGUCGGCGGCCu -3'
miRNA:   3'- cGUGGA---GCUGgUcUGgUAGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 27295 0.67 0.759091
Target:  5'- cGCGCCUUGGCgaAGGCUucccaCGACGcCCa -3'
miRNA:   3'- -CGUGGAGCUGg-UCUGGua---GUUGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.