miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26796 3' -52.5 NC_005808.1 + 3409 0.66 0.819304
Target:  5'- -uGCCUUGGCgGGGCCuuu--CGGCCc -3'
miRNA:   3'- cgUGGAGCUGgUCUGGuaguuGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 9599 0.66 0.836936
Target:  5'- cGCACCUCGGgCGugaguucGACguUCAG-GGCCu -3'
miRNA:   3'- -CGUGGAGCUgGU-------CUGguAGUUgCUGG- -5'
26796 3' -52.5 NC_005808.1 + 33874 0.66 0.799939
Target:  5'- cGCGCC-CG-CCGGGCaCAUCuuCGugUu -3'
miRNA:   3'- -CGUGGaGCuGGUCUG-GUAGuuGCugG- -5'
26796 3' -52.5 NC_005808.1 + 33339 0.66 0.828682
Target:  5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3'
miRNA:   3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 34037 0.66 0.819304
Target:  5'- cGCGCCugUCGcuGCCc-GCCAUCGgcGCGGCUg -3'
miRNA:   3'- -CGUGG--AGC--UGGucUGGUAGU--UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 27368 0.66 0.828682
Target:  5'- aGCA-CUCGuCCAG-CCAUU--CGGCCa -3'
miRNA:   3'- -CGUgGAGCuGGUCuGGUAGuuGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 35822 0.66 0.819304
Target:  5'- gGCGCUga-ACCAGGCCAUCGAgcagguCG-CCa -3'
miRNA:   3'- -CGUGGagcUGGUCUGGUAGUU------GCuGG- -5'
26796 3' -52.5 NC_005808.1 + 37302 0.66 0.809719
Target:  5'- -gGCCUCGaccuGCCAGACaugcagcaAUCGACG-CUg -3'
miRNA:   3'- cgUGGAGC----UGGUCUGg-------UAGUUGCuGG- -5'
26796 3' -52.5 NC_005808.1 + 4434 0.66 0.818355
Target:  5'- cGCGCCagGgggaagccGCCAGcgguggcACCGUCAugcacaACGACCg -3'
miRNA:   3'- -CGUGGagC--------UGGUC-------UGGUAGU------UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 33243 0.66 0.828682
Target:  5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3'
miRNA:   3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 27744 0.66 0.799939
Target:  5'- gGCGCCcagCGugCGGcgcugGCCGcCAACGGCa -3'
miRNA:   3'- -CGUGGa--GCugGUC-----UGGUaGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 33387 0.66 0.828682
Target:  5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3'
miRNA:   3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 33291 0.66 0.828682
Target:  5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3'
miRNA:   3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 33435 0.66 0.828682
Target:  5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3'
miRNA:   3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 33483 0.66 0.828682
Target:  5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3'
miRNA:   3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 4579 0.66 0.806805
Target:  5'- cGCugCUCGgugcGCCAGGCgAggaacugcucggccUCGGCGAUg -3'
miRNA:   3'- -CGugGAGC----UGGUCUGgU--------------AGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 34990 0.66 0.819304
Target:  5'- gGCGCUgcgCGACCAcGugcuguccACCGUCGccgACGACUu -3'
miRNA:   3'- -CGUGGa--GCUGGU-C--------UGGUAGU---UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 31881 0.66 0.837842
Target:  5'- uGCAagacccCCUC-ACCAGuuccGCCAUCGA-GGCCg -3'
miRNA:   3'- -CGU------GGAGcUGGUC----UGGUAGUUgCUGG- -5'
26796 3' -52.5 NC_005808.1 + 7353 0.66 0.837842
Target:  5'- cGCgGCCUCGACCucGGCgucguuCGUCcAGCGGCg -3'
miRNA:   3'- -CG-UGGAGCUGGu-CUG------GUAG-UUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 35920 0.66 0.819304
Target:  5'- uGCACgaugCGACCucaAGGCCAacuaCGACGGCUu -3'
miRNA:   3'- -CGUGga--GCUGG---UCUGGUa---GUUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.