miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26796 3' -52.5 NC_005808.1 + 37117 1.15 0.000625
Target:  5'- gGCACCUCGACCAGACCAUCAACGACCg -3'
miRNA:   3'- -CGUGGAGCUGGUCUGGUAGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 14542 0.8 0.162046
Target:  5'- cGCugUUCGAgCAGACCGUCGcCGACg -3'
miRNA:   3'- -CGugGAGCUgGUCUGGUAGUuGCUGg -5'
26796 3' -52.5 NC_005808.1 + 6584 0.79 0.186245
Target:  5'- cCGCCUCGGCCAGgggGCUgcggucuuuGUCGAUGACCa -3'
miRNA:   3'- cGUGGAGCUGGUC---UGG---------UAGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 10241 0.79 0.186245
Target:  5'- -gGCCUCGGCgGcGACCG-CAGCGACCu -3'
miRNA:   3'- cgUGGAGCUGgU-CUGGUaGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 40653 0.79 0.196787
Target:  5'- cGCGCgCUCGACCAGAaCCcgCAgACGAUCc -3'
miRNA:   3'- -CGUG-GAGCUGGUCU-GGuaGU-UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 28203 0.78 0.207846
Target:  5'- gGCGCCUUGuCCAGgucgGCCAcgcCGACGACCa -3'
miRNA:   3'- -CGUGGAGCuGGUC----UGGUa--GUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 14812 0.78 0.221821
Target:  5'- uGCACCUCGGcggcgcugccuucgcCCAGgucgauGCCGUUGGCGGCCa -3'
miRNA:   3'- -CGUGGAGCU---------------GGUC------UGGUAGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 19039 0.77 0.237855
Target:  5'- cGCACCugccggcgaugUCGGCCgAGGCCAUCGaccGCGugCg -3'
miRNA:   3'- -CGUGG-----------AGCUGG-UCUGGUAGU---UGCugG- -5'
26796 3' -52.5 NC_005808.1 + 33403 0.77 0.237855
Target:  5'- cGCGCCgcCGAgCAGGCCAacgUCGACGGCg -3'
miRNA:   3'- -CGUGGa-GCUgGUCUGGU---AGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 29030 0.77 0.243628
Target:  5'- cGCGCUUCGGCCAGGucgauacCCAcCGGCGGCUc -3'
miRNA:   3'- -CGUGGAGCUGGUCU-------GGUaGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 41914 0.77 0.264405
Target:  5'- gGCGCC-CGGCCGGcgccGCCGUaGGCGGCCu -3'
miRNA:   3'- -CGUGGaGCUGGUC----UGGUAgUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 9765 0.77 0.264405
Target:  5'- uCGCCUCGAaguCCAGAUCGUUccacGCGGCCa -3'
miRNA:   3'- cGUGGAGCU---GGUCUGGUAGu---UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 24065 0.77 0.267188
Target:  5'- -gACUUCGGCCAGGCCAaucccaacaccggcaUgGAUGACCg -3'
miRNA:   3'- cgUGGAGCUGGUCUGGU---------------AgUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 16400 0.76 0.271407
Target:  5'- aCGCCUCGACCuacaccgaaGCCAUCGccaccgaaaucuGCGACCg -3'
miRNA:   3'- cGUGGAGCUGGuc-------UGGUAGU------------UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 34786 0.76 0.285858
Target:  5'- cGCGCCUCGACCA---UAUCAGCGAgUg -3'
miRNA:   3'- -CGUGGAGCUGGUcugGUAGUUGCUgG- -5'
26796 3' -52.5 NC_005808.1 + 8283 0.76 0.30866
Target:  5'- cGCACgcuaUCGACCAGGCCGcggaauucuUCAACGGUCa -3'
miRNA:   3'- -CGUGg---AGCUGGUCUGGU---------AGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 24149 0.75 0.316564
Target:  5'- cGCGCCUgGcCCAGcGCC-UCGACGGCUg -3'
miRNA:   3'- -CGUGGAgCuGGUC-UGGuAGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 20535 0.75 0.316564
Target:  5'- cGCGCCgaccgCGACCcGAgCAagcgCGACGACCg -3'
miRNA:   3'- -CGUGGa----GCUGGuCUgGUa---GUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 26975 0.75 0.324619
Target:  5'- aGCACCUCGAagGGAaaaCCGUCAGCauccuGGCCg -3'
miRNA:   3'- -CGUGGAGCUggUCU---GGUAGUUG-----CUGG- -5'
26796 3' -52.5 NC_005808.1 + 35280 0.75 0.324619
Target:  5'- gGCugCUgCGuuCgCAGACCAUCGACGGCg -3'
miRNA:   3'- -CGugGA-GCu-G-GUCUGGUAGUUGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.