miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26796 3' -52.5 NC_005808.1 + 42171 0.7 0.592795
Target:  5'- aGCACUaaGACCAacguGGCCcgCGACGugCu -3'
miRNA:   3'- -CGUGGagCUGGU----CUGGuaGUUGCugG- -5'
26796 3' -52.5 NC_005808.1 + 29990 0.72 0.494247
Target:  5'- uGCAgCCgUCGAaCGGGCCAUCGugcuccaacugcACGGCCg -3'
miRNA:   3'- -CGU-GG-AGCUgGUCUGGUAGU------------UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 10300 0.72 0.498485
Target:  5'- aGCACCUCGgggugccacuucGCCAGuuucgccaggccguaGCCGUCGcuGCGGCg -3'
miRNA:   3'- -CGUGGAGC------------UGGUC---------------UGGUAGU--UGCUGg -5'
26796 3' -52.5 NC_005808.1 + 24748 0.71 0.515596
Target:  5'- cGCgGCCUCGACCcauGCUGUCGgaAUGACCu -3'
miRNA:   3'- -CG-UGGAGCUGGuc-UGGUAGU--UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 23225 0.71 0.52641
Target:  5'- -gGCCUCGGCCucGGCCAc---CGACCg -3'
miRNA:   3'- cgUGGAGCUGGu-CUGGUaguuGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 30975 0.71 0.537308
Target:  5'- cUACUUCGGCguGACgGUgGACGAUCu -3'
miRNA:   3'- cGUGGAGCUGguCUGgUAgUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 41003 0.71 0.537308
Target:  5'- aCGCaCUCGACC--ACCAggaaggCGGCGGCCa -3'
miRNA:   3'- cGUG-GAGCUGGucUGGUa-----GUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 18268 0.7 0.581592
Target:  5'- uGCGCCgagaacuuGCCGG-CCGUCAGCgGGCCg -3'
miRNA:   3'- -CGUGGagc-----UGGUCuGGUAGUUG-CUGG- -5'
26796 3' -52.5 NC_005808.1 + 17097 0.7 0.590551
Target:  5'- cGguUCUCGGCCGGGCCuuggggcuUGACCa -3'
miRNA:   3'- -CguGGAGCUGGUCUGGuaguu---GCUGG- -5'
26796 3' -52.5 NC_005808.1 + 13155 0.72 0.47331
Target:  5'- uGCGCCUCGAUgucGGCCAguguCGGCCg -3'
miRNA:   3'- -CGUGGAGCUGgu-CUGGUaguuGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 11029 0.73 0.413375
Target:  5'- aCACCUgcUGcACCGGGCCGUUcuCGGCCg -3'
miRNA:   3'- cGUGGA--GC-UGGUCUGGUAGuuGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 35735 0.74 0.367156
Target:  5'- uCugUUCGagGCCaAGACCGUCAACGGCg -3'
miRNA:   3'- cGugGAGC--UGG-UCUGGUAGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 40653 0.79 0.196787
Target:  5'- cGCGCgCUCGACCAGAaCCcgCAgACGAUCc -3'
miRNA:   3'- -CGUG-GAGCUGGUCU-GGuaGU-UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 28203 0.78 0.207846
Target:  5'- gGCGCCUUGuCCAGgucgGCCAcgcCGACGACCa -3'
miRNA:   3'- -CGUGGAGCuGGUC----UGGUa--GUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 14812 0.78 0.221821
Target:  5'- uGCACCUCGGcggcgcugccuucgcCCAGgucgauGCCGUUGGCGGCCa -3'
miRNA:   3'- -CGUGGAGCU---------------GGUC------UGGUAGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 29030 0.77 0.243628
Target:  5'- cGCGCUUCGGCCAGGucgauacCCAcCGGCGGCUc -3'
miRNA:   3'- -CGUGGAGCUGGUCU-------GGUaGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 9765 0.77 0.264405
Target:  5'- uCGCCUCGAaguCCAGAUCGUUccacGCGGCCa -3'
miRNA:   3'- cGUGGAGCU---GGUCUGGUAGu---UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 34786 0.76 0.285858
Target:  5'- cGCGCCUCGACCA---UAUCAGCGAgUg -3'
miRNA:   3'- -CGUGGAGCUGGUcugGUAGUUGCUgG- -5'
26796 3' -52.5 NC_005808.1 + 8283 0.76 0.30866
Target:  5'- cGCACgcuaUCGACCAGGCCGcggaauucuUCAACGGUCa -3'
miRNA:   3'- -CGUGg---AGCUGGUCUGGU---------AGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 24149 0.75 0.316564
Target:  5'- cGCGCCUgGcCCAGcGCC-UCGACGGCUg -3'
miRNA:   3'- -CGUGGAgCuGGUC-UGGuAGUUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.