miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26796 3' -52.5 NC_005808.1 + 14542 0.8 0.162046
Target:  5'- cGCugUUCGAgCAGACCGUCGcCGACg -3'
miRNA:   3'- -CGugGAGCUgGUCUGGUAGUuGCUGg -5'
26796 3' -52.5 NC_005808.1 + 1672 0.73 0.42304
Target:  5'- uGCACCUCGcGCuUGGACUcgCGGCGAgCCa -3'
miRNA:   3'- -CGUGGAGC-UG-GUCUGGuaGUUGCU-GG- -5'
26796 3' -52.5 NC_005808.1 + 7475 0.72 0.452828
Target:  5'- uGCACCaggacUCGACCAGAUCGaCcGCGcCCa -3'
miRNA:   3'- -CGUGG-----AGCUGGUCUGGUaGuUGCuGG- -5'
26796 3' -52.5 NC_005808.1 + 7353 0.66 0.837842
Target:  5'- cGCgGCCUCGACCucGGCgucguuCGUCcAGCGGCg -3'
miRNA:   3'- -CG-UGGAGCUGGu-CUG------GUAG-UUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 33403 0.77 0.237855
Target:  5'- cGCGCCgcCGAgCAGGCCAacgUCGACGGCg -3'
miRNA:   3'- -CGUGGa-GCUgGUCUGGU---AGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 41914 0.77 0.264405
Target:  5'- gGCGCC-CGGCCGGcgccGCCGUaGGCGGCCu -3'
miRNA:   3'- -CGUGGaGCUGGUC----UGGUAgUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 16400 0.76 0.271407
Target:  5'- aCGCCUCGACCuacaccgaaGCCAUCGccaccgaaaucuGCGACCg -3'
miRNA:   3'- cGUGGAGCUGGuc-------UGGUAGU------------UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 20535 0.75 0.316564
Target:  5'- cGCGCCgaccgCGACCcGAgCAagcgCGACGACCg -3'
miRNA:   3'- -CGUGGa----GCUGGuCUgGUa---GUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 9740 0.75 0.324619
Target:  5'- -aAUCUCGGCgCcGACCGUCuGCGGCCa -3'
miRNA:   3'- cgUGGAGCUG-GuCUGGUAGuUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 23285 0.73 0.403846
Target:  5'- cGCGCCUucaucgaaggcaUGaACCAGACCca-GGCGACCa -3'
miRNA:   3'- -CGUGGA------------GC-UGGUCUGGuagUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 31402 0.74 0.358349
Target:  5'- uGCGCggcaUUGACCGcACCAUCAccACGGCCg -3'
miRNA:   3'- -CGUGg---AGCUGGUcUGGUAGU--UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 35280 0.75 0.324619
Target:  5'- gGCugCUgCGuuCgCAGACCAUCGACGGCg -3'
miRNA:   3'- -CGugGA-GCu-G-GUCUGGUAGUUGCUGg -5'
26796 3' -52.5 NC_005808.1 + 10241 0.79 0.186245
Target:  5'- -gGCCUCGGCgGcGACCG-CAGCGACCu -3'
miRNA:   3'- cgUGGAGCUGgU-CUGGUaGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 30711 0.74 0.367156
Target:  5'- cGCACC-CGACCAGAagaacaCCcUCAugGGCg -3'
miRNA:   3'- -CGUGGaGCUGGUCU------GGuAGUugCUGg -5'
26796 3' -52.5 NC_005808.1 + 6584 0.79 0.186245
Target:  5'- cCGCCUCGGCCAGgggGCUgcggucuuuGUCGAUGACCa -3'
miRNA:   3'- cGUGGAGCUGGUC---UGG---------UAGUUGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 26975 0.75 0.324619
Target:  5'- aGCACCUCGAagGGAaaaCCGUCAGCauccuGGCCg -3'
miRNA:   3'- -CGUGGAGCUggUCU---GGUAGUUG-----CUGG- -5'
26796 3' -52.5 NC_005808.1 + 4392 0.74 0.394458
Target:  5'- gGCGCCgUCGcGCCGGGCCuUgAGCGugCg -3'
miRNA:   3'- -CGUGG-AGC-UGGUCUGGuAgUUGCugG- -5'
26796 3' -52.5 NC_005808.1 + 3805 0.73 0.42304
Target:  5'- gGCAgCaUGACCAGGCgGUCGggggcgccguuGCGACCa -3'
miRNA:   3'- -CGUgGaGCUGGUCUGgUAGU-----------UGCUGG- -5'
26796 3' -52.5 NC_005808.1 + 19039 0.77 0.237855
Target:  5'- cGCACCugccggcgaugUCGGCCgAGGCCAUCGaccGCGugCg -3'
miRNA:   3'- -CGUGG-----------AGCUGG-UCUGGUAGU---UGCugG- -5'
26796 3' -52.5 NC_005808.1 + 24065 0.77 0.267188
Target:  5'- -gACUUCGGCCAGGCCAaucccaacaccggcaUgGAUGACCg -3'
miRNA:   3'- cgUGGAGCUGGUCUGGU---------------AgUUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.