miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26796 5' -57.1 NC_005808.1 + 688 0.66 0.573521
Target:  5'- -cGG-CGGcGCCGGCCgggcCGCCCAagauacCGCc -3'
miRNA:   3'- uaCCaGCUaUGGCUGGa---GCGGGU------GCG- -5'
26796 5' -57.1 NC_005808.1 + 7069 0.66 0.573521
Target:  5'- -aGGUacuucaUGAcGCCGcgGCCUacccacggcgCGCCCACGCg -3'
miRNA:   3'- uaCCA------GCUaUGGC--UGGA----------GCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 27199 0.66 0.573521
Target:  5'- -cGGUCGu--CCGGCaucuUCGCCggcccgCACGCg -3'
miRNA:   3'- uaCCAGCuauGGCUGg---AGCGG------GUGCG- -5'
26796 5' -57.1 NC_005808.1 + 42041 0.66 0.573521
Target:  5'- cAUGGUCGAgGCgUGGuuUUucagcgGCCCGCGCa -3'
miRNA:   3'- -UACCAGCUaUG-GCUggAG------CGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 15032 0.66 0.573521
Target:  5'- -cGcGUUGGUGuuGGCgaUGCCCGCGUu -3'
miRNA:   3'- uaC-CAGCUAUggCUGgaGCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 32365 0.66 0.573521
Target:  5'- -cGGUCGccGCCGAggccCCggcCGCCCA-GCa -3'
miRNA:   3'- uaCCAGCuaUGGCU----GGa--GCGGGUgCG- -5'
26796 5' -57.1 NC_005808.1 + 29286 0.66 0.573521
Target:  5'- cGUGGUaggcgaCGAacUGCUGGcCCUUGCCCA-GCa -3'
miRNA:   3'- -UACCA------GCU--AUGGCU-GGAGCGGGUgCG- -5'
26796 5' -57.1 NC_005808.1 + 14922 0.66 0.571339
Target:  5'- cUGGcCGGccucaagUGCCGACUgcgCGCCCAacucggcgaugcuCGCg -3'
miRNA:   3'- uACCaGCU-------AUGGCUGGa--GCGGGU-------------GCG- -5'
26796 5' -57.1 NC_005808.1 + 8509 0.66 0.530338
Target:  5'- --cGUCGAUGCCcuuGAUgUCGCCgGCGa -3'
miRNA:   3'- uacCAGCUAUGG---CUGgAGCGGgUGCg -5'
26796 5' -57.1 NC_005808.1 + 17636 0.66 0.530338
Target:  5'- -cGcGUCGAguaCGACUUCGaCCC-CGCg -3'
miRNA:   3'- uaC-CAGCUaugGCUGGAGC-GGGuGCG- -5'
26796 5' -57.1 NC_005808.1 + 12801 0.66 0.523958
Target:  5'- -cGGcaUCGAgcgcgagacagcguaUGCCGAaaUCUCGCgCACGCg -3'
miRNA:   3'- uaCC--AGCU---------------AUGGCU--GGAGCGgGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 36195 0.66 0.51972
Target:  5'- cAUGGgccgCGAcuacaccggGCCGGCCg-GCCUGCGCc -3'
miRNA:   3'- -UACCa---GCUa--------UGGCUGGagCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 10512 0.66 0.51972
Target:  5'- uUGaUCGAacUGCUGACCgcCGgCCACGCu -3'
miRNA:   3'- uACcAGCU--AUGGCUGGa-GCgGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 33811 0.66 0.51972
Target:  5'- -cGG-CGcgGCCGACCcaucgUGCgCCGCGUg -3'
miRNA:   3'- uaCCaGCuaUGGCUGGa----GCG-GGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 13960 0.67 0.509187
Target:  5'- cUGGcacugcgCGGgaacugGCCGGCCUCaUCCGCGCc -3'
miRNA:   3'- uACCa------GCUa-----UGGCUGGAGcGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 20627 0.67 0.509187
Target:  5'- -aGGUCGGUGUCGGCCUgCGCUCGu-- -3'
miRNA:   3'- uaCCAGCUAUGGCUGGA-GCGGGUgcg -5'
26796 5' -57.1 NC_005808.1 + 7626 0.67 0.509187
Target:  5'- gAUGGUCaGGggGCgCGG-CUCGaCCCACGCc -3'
miRNA:   3'- -UACCAG-CUa-UG-GCUgGAGC-GGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 616 0.67 0.509187
Target:  5'- -cGG-CGAUGauGGCCUCaGCCUcgGCGCg -3'
miRNA:   3'- uaCCaGCUAUggCUGGAG-CGGG--UGCG- -5'
26796 5' -57.1 NC_005808.1 + 6266 0.67 0.50291
Target:  5'- -cGGUUGAUcugcgcgcugggcagGCCGAacaggUCGCCCACGa -3'
miRNA:   3'- uaCCAGCUA---------------UGGCUgg---AGCGGGUGCg -5'
26796 5' -57.1 NC_005808.1 + 37025 0.67 0.498744
Target:  5'- cGUGGaguAUGCCGGCCUCGacaucgaagCCAUGCg -3'
miRNA:   3'- -UACCagcUAUGGCUGGAGCg--------GGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.