miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26796 5' -57.1 NC_005808.1 + 37151 1.09 0.000528
Target:  5'- gAUGGUCGAUACCGACCUCGCCCACGCc -3'
miRNA:   3'- -UACCAGCUAUGGCUGGAGCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 14839 0.79 0.085733
Target:  5'- -aGGUCGAUGCCGuuggcgGCCagCGCCgCACGCu -3'
miRNA:   3'- uaCCAGCUAUGGC------UGGa-GCGG-GUGCG- -5'
26796 5' -57.1 NC_005808.1 + 8834 0.76 0.124039
Target:  5'- -cGGccUUGAUACCGuCCUCGCCgACGUa -3'
miRNA:   3'- uaCC--AGCUAUGGCuGGAGCGGgUGCG- -5'
26796 5' -57.1 NC_005808.1 + 13565 0.76 0.127568
Target:  5'- -cGGUgGGUAUCGACCUgGCCgaaGCGCg -3'
miRNA:   3'- uaCCAgCUAUGGCUGGAgCGGg--UGCG- -5'
26796 5' -57.1 NC_005808.1 + 12549 0.76 0.142631
Target:  5'- -gGcGUCGGUgaauuucuuGCCGGCCUCGCgCUGCGCg -3'
miRNA:   3'- uaC-CAGCUA---------UGGCUGGAGCG-GGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 28662 0.74 0.168286
Target:  5'- -aGaUCGGUGCCGgcgGCCUCGCCaGCGCg -3'
miRNA:   3'- uaCcAGCUAUGGC---UGGAGCGGgUGCG- -5'
26796 5' -57.1 NC_005808.1 + 13487 0.74 0.168286
Target:  5'- cUGGgCGAUGCCGACCgCGCCUuuGgGCg -3'
miRNA:   3'- uACCaGCUAUGGCUGGaGCGGG--UgCG- -5'
26796 5' -57.1 NC_005808.1 + 8375 0.74 0.177718
Target:  5'- -cGGcUCGAacCCGGCCUCGCgCugGCu -3'
miRNA:   3'- uaCC-AGCUauGGCUGGAGCGgGugCG- -5'
26796 5' -57.1 NC_005808.1 + 21327 0.74 0.177718
Target:  5'- -gGGcUUGAUGCCGGCCaccgCGCCCAgGUu -3'
miRNA:   3'- uaCC-AGCUAUGGCUGGa---GCGGGUgCG- -5'
26796 5' -57.1 NC_005808.1 + 28160 0.74 0.182609
Target:  5'- gGUGGUCag-AUCGACCacgccgUUGCCCACGCc -3'
miRNA:   3'- -UACCAGcuaUGGCUGG------AGCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 33984 0.73 0.208877
Target:  5'- -aGGgCG-UACCGGCCaCGCCUACGCc -3'
miRNA:   3'- uaCCaGCuAUGGCUGGaGCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 1756 0.72 0.232183
Target:  5'- -cGGUCaugGCCGGCCUgCGCCUGgCGCg -3'
miRNA:   3'- uaCCAGcuaUGGCUGGA-GCGGGU-GCG- -5'
26796 5' -57.1 NC_005808.1 + 4255 0.71 0.271205
Target:  5'- --aGUCGGUGCCGGCCgucagCGCCgGCa- -3'
miRNA:   3'- uacCAGCUAUGGCUGGa----GCGGgUGcg -5'
26796 5' -57.1 NC_005808.1 + 25513 0.71 0.271205
Target:  5'- -cGGcCGAgaaccgcGCCGGCUUCGCCUucguGCGCg -3'
miRNA:   3'- uaCCaGCUa------UGGCUGGAGCGGG----UGCG- -5'
26796 5' -57.1 NC_005808.1 + 17613 0.71 0.2782
Target:  5'- --uGUCGAUACCGGCCUCGauguuugCCGCa- -3'
miRNA:   3'- uacCAGCUAUGGCUGGAGCg------GGUGcg -5'
26796 5' -57.1 NC_005808.1 + 17840 0.71 0.2782
Target:  5'- -gGGUUGAUGCCcGCCaccguggccucgUCGCCCAgGUa -3'
miRNA:   3'- uaCCAGCUAUGGcUGG------------AGCGGGUgCG- -5'
26796 5' -57.1 NC_005808.1 + 18027 0.71 0.2782
Target:  5'- -cGGccCGAccgugGCCGGCCUCGCcaucgCCGCGCu -3'
miRNA:   3'- uaCCa-GCUa----UGGCUGGAGCG-----GGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 16793 0.71 0.285337
Target:  5'- -cGGUgcagaucaaCGAUACCGAgCgCGCCgCGCGCa -3'
miRNA:   3'- uaCCA---------GCUAUGGCUgGaGCGG-GUGCG- -5'
26796 5' -57.1 NC_005808.1 + 24722 0.71 0.292618
Target:  5'- -cGGUCGG-GCCGcuuccACCgCGCCUGCGCg -3'
miRNA:   3'- uaCCAGCUaUGGC-----UGGaGCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 5454 0.7 0.307615
Target:  5'- -aGGUCGGUAUCGACCaUCaCgCCGCGg -3'
miRNA:   3'- uaCCAGCUAUGGCUGG-AGcG-GGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.