miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26796 5' -57.1 NC_005808.1 + 25300 0.7 0.31533
Target:  5'- -aGGUCGugcgGCCGGCCcUGCCaccgGCGCu -3'
miRNA:   3'- uaCCAGCua--UGGCUGGaGCGGg---UGCG- -5'
26796 5' -57.1 NC_005808.1 + 5196 0.7 0.31533
Target:  5'- --cGUCGAUauuGCCGGCUaccgUGCCCACGUc -3'
miRNA:   3'- uacCAGCUA---UGGCUGGa---GCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 18911 0.7 0.339348
Target:  5'- -aGGUCGAUGa-GGUCggCGCCCGCGCu -3'
miRNA:   3'- uaCCAGCUAUggCUGGa-GCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 37846 0.7 0.347644
Target:  5'- -cGGUCGAUAaaGACCagCGCCagaUugGCa -3'
miRNA:   3'- uaCCAGCUAUggCUGGa-GCGG---GugCG- -5'
26796 5' -57.1 NC_005808.1 + 23547 0.69 0.355233
Target:  5'- -cGGUCGAUggccucgGCCGACaUCGCCgGCa- -3'
miRNA:   3'- uaCCAGCUA-------UGGCUGgAGCGGgUGcg -5'
26796 5' -57.1 NC_005808.1 + 10000 0.69 0.364666
Target:  5'- -gGGUCGAaagUGCCGcgcgcccgGCCccCGCCCugGUa -3'
miRNA:   3'- uaCCAGCU---AUGGC--------UGGa-GCGGGugCG- -5'
26796 5' -57.1 NC_005808.1 + 18645 0.69 0.37339
Target:  5'- -cGGcaaAUGCCGACCUCGCCgGgCGUg -3'
miRNA:   3'- uaCCagcUAUGGCUGGAGCGGgU-GCG- -5'
26796 5' -57.1 NC_005808.1 + 25525 0.69 0.37339
Target:  5'- -aGGUCGGUuuuGCCGccGCCggcagCGCCCcCGUa -3'
miRNA:   3'- uaCCAGCUA---UGGC--UGGa----GCGGGuGCG- -5'
26796 5' -57.1 NC_005808.1 + 21706 0.69 0.37339
Target:  5'- -aGGUCGAgGuuGACCUCGa--ACGCg -3'
miRNA:   3'- uaCCAGCUaUggCUGGAGCgggUGCG- -5'
26796 5' -57.1 NC_005808.1 + 12910 0.69 0.37339
Target:  5'- uUGG-CGAUGCgcuCGGCCgCGCCCauaACGCu -3'
miRNA:   3'- uACCaGCUAUG---GCUGGaGCGGG---UGCG- -5'
26796 5' -57.1 NC_005808.1 + 24124 0.69 0.382256
Target:  5'- gGUGGaCGAaucgGCCGACgC-CGCCgGCGCc -3'
miRNA:   3'- -UACCaGCUa---UGGCUG-GaGCGGgUGCG- -5'
26796 5' -57.1 NC_005808.1 + 32119 0.69 0.39126
Target:  5'- cUGGcCGcUGCCGACCUcgaCGCCCcCGa -3'
miRNA:   3'- uACCaGCuAUGGCUGGA---GCGGGuGCg -5'
26796 5' -57.1 NC_005808.1 + 10111 0.69 0.39126
Target:  5'- -aGGUCGGUaguGCCuGuCCUCGUaccggCCACGCc -3'
miRNA:   3'- uaCCAGCUA---UGG-CuGGAGCG-----GGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 3637 0.69 0.397644
Target:  5'- gGUGGUaauaGGUuugcguuuacucacGCCaGcACCUCGUCCACGCc -3'
miRNA:   3'- -UACCAg---CUA--------------UGG-C-UGGAGCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 11205 0.68 0.409678
Target:  5'- -cGGUCaAUGCCgcgcauGACCgccacguuccCGCCCACGCc -3'
miRNA:   3'- uaCCAGcUAUGG------CUGGa---------GCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 35601 0.68 0.409678
Target:  5'- ----gCGA-GCCGACC-CGCUCGCGCg -3'
miRNA:   3'- uaccaGCUaUGGCUGGaGCGGGUGCG- -5'
26796 5' -57.1 NC_005808.1 + 30735 0.68 0.419087
Target:  5'- cAUGGgCGAUAUUGGCgcggggUUCGCCCAgGCc -3'
miRNA:   3'- -UACCaGCUAUGGCUG------GAGCGGGUgCG- -5'
26796 5' -57.1 NC_005808.1 + 14384 0.68 0.428626
Target:  5'- cGUGGUCGucggcgugGCCGACCUggacaaggCGCCgCACcuGCu -3'
miRNA:   3'- -UACCAGCua------UGGCUGGA--------GCGG-GUG--CG- -5'
26796 5' -57.1 NC_005808.1 + 21133 0.68 0.428626
Target:  5'- cAUGGUCGAgGCCaacauCCUgcCGCCCcCGCc -3'
miRNA:   3'- -UACCAGCUaUGGcu---GGA--GCGGGuGCG- -5'
26796 5' -57.1 NC_005808.1 + 10850 0.67 0.457991
Target:  5'- gGUGGUCGAgcagGCCcugcguGGCUUCGgUCgGCGCg -3'
miRNA:   3'- -UACCAGCUa---UGG------CUGGAGC-GGgUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.