miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26798 3' -54.2 NC_005808.1 + 16569 0.72 0.350042
Target:  5'- gACGUUGUAGcgCGAC-GCGCCggacgaGGCCg -3'
miRNA:   3'- gUGCAACGUCaaGUUGcCGCGG------UCGG- -5'
26798 3' -54.2 NC_005808.1 + 16744 0.71 0.423718
Target:  5'- gACGUgGCGGUcacgcUCGugGGCG-UAGCCa -3'
miRNA:   3'- gUGCAaCGUCA-----AGUugCCGCgGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 16823 0.75 0.244215
Target:  5'- gGCGgcGCAGUUCAcGCGGCGCaUAGUUc -3'
miRNA:   3'- gUGCaaCGUCAAGU-UGCCGCG-GUCGG- -5'
26798 3' -54.2 NC_005808.1 + 17639 0.66 0.695743
Target:  5'- gCAuCGUgcgGCAGUacggccacgaucUUGAUGGCGUCGGCg -3'
miRNA:   3'- -GU-GCAa--CGUCA------------AGUUGCCGCGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 18088 0.72 0.350042
Target:  5'- gACGUgauCGG--CGugGGCGCCAGCCc -3'
miRNA:   3'- gUGCAac-GUCaaGUugCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 18459 0.76 0.20767
Target:  5'- gACGgucGCGGcgcCGGCGGCGUCGGCCg -3'
miRNA:   3'- gUGCaa-CGUCaa-GUUGCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 18834 0.68 0.549525
Target:  5'- cCGCGgcGCA--UCGGCccgguGGCGCCGGCa -3'
miRNA:   3'- -GUGCaaCGUcaAGUUG-----CCGCGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 19331 0.66 0.706853
Target:  5'- --aGgcGCGGUcuUCGGacaGGCGCCAGgCg -3'
miRNA:   3'- gugCaaCGUCA--AGUUg--CCGCGGUCgG- -5'
26798 3' -54.2 NC_005808.1 + 20493 0.69 0.527557
Target:  5'- uCGCGUUGguGUUgAACGaaaGCCGGUa -3'
miRNA:   3'- -GUGCAACguCAAgUUGCcg-CGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 20619 0.7 0.433562
Target:  5'- gGCGUcGCAGgu---CGGUGUCGGCCu -3'
miRNA:   3'- gUGCAaCGUCaaguuGCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 20711 0.66 0.706853
Target:  5'- aAUGgaaGCcuuGggCGACGuGCGCCAGCUa -3'
miRNA:   3'- gUGCaa-CGu--CaaGUUGC-CGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 21041 0.66 0.706853
Target:  5'- uCAUGUUGguG---AGCGGCauGUCGGCCu -3'
miRNA:   3'- -GUGCAACguCaagUUGCCG--CGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 21849 0.78 0.144446
Target:  5'- gCGCGgcGCAGcgCcucuACGGCGCCAGCa -3'
miRNA:   3'- -GUGCaaCGUCaaGu---UGCCGCGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 21996 0.69 0.516695
Target:  5'- aGCG-UGCGGguuUCGuCGGCGCCuGGCUc -3'
miRNA:   3'- gUGCaACGUCa--AGUuGCCGCGG-UCGG- -5'
26798 3' -54.2 NC_005808.1 + 22045 0.69 0.527557
Target:  5'- cCAUGUUGCGGUcgucgcgcuugcUCGGgucgcgguCGGCGCgCGGCUc -3'
miRNA:   3'- -GUGCAACGUCA------------AGUU--------GCCGCG-GUCGG- -5'
26798 3' -54.2 NC_005808.1 + 22240 0.7 0.433562
Target:  5'- cCugGUUGuCGGccgCGAUGGCguauucGCCGGCCg -3'
miRNA:   3'- -GugCAAC-GUCaa-GUUGCCG------CGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 22665 0.66 0.695743
Target:  5'- cCACGgccgacaaGgAGUUCGGCGGCGacaAGCUg -3'
miRNA:   3'- -GUGCaa------CgUCAAGUUGCCGCgg-UCGG- -5'
26798 3' -54.2 NC_005808.1 + 23539 0.66 0.684568
Target:  5'- gGCGcacGCGG-UCGAUGGCcUCGGCCg -3'
miRNA:   3'- gUGCaa-CGUCaAGUUGCCGcGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 23627 0.67 0.639454
Target:  5'- aACG-UGCGGUUgGuuucGCGGUaGCCGGCg -3'
miRNA:   3'- gUGCaACGUCAAgU----UGCCG-CGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 23723 0.66 0.717886
Target:  5'- uCGCGggcCAGUgccUCggUGGCGCgCAGCa -3'
miRNA:   3'- -GUGCaacGUCA---AGuuGCCGCG-GUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.