miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26798 3' -54.2 NC_005808.1 + 8784 0.68 0.594222
Target:  5'- aCGCGgcGCAcgaugggUCGGCcGCGCCGGUCa -3'
miRNA:   3'- -GUGCaaCGUca-----AGUUGcCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 9215 0.7 0.443539
Target:  5'- gCGCGgcGCAcGUUCuGCGGCGCgccCGGCg -3'
miRNA:   3'- -GUGCaaCGU-CAAGuUGCCGCG---GUCGg -5'
26798 3' -54.2 NC_005808.1 + 9860 0.71 0.414008
Target:  5'- cUugGUggggGCGG-UC-AUGGCGUCAGCCc -3'
miRNA:   3'- -GugCAa---CGUCaAGuUGCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 9938 0.68 0.582974
Target:  5'- uCACGUcggGCAGcUUC-GCGGCGCCGa-- -3'
miRNA:   3'- -GUGCAa--CGUC-AAGuUGCCGCGGUcgg -5'
26798 3' -54.2 NC_005808.1 + 9986 0.66 0.695743
Target:  5'- gGCGUcGCGGcccUUGACGcGgGCCAGCUu -3'
miRNA:   3'- gUGCAaCGUCa--AGUUGC-CgCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 10264 0.66 0.684568
Target:  5'- cCugGgcgGCGGUUgu-CGGgaCGCCGGCCu -3'
miRNA:   3'- -GugCaa-CGUCAAguuGCC--GCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 10941 0.68 0.560617
Target:  5'- gGCcucggGCAGUUgcGCGGCGaCAGCCg -3'
miRNA:   3'- gUGcaa--CGUCAAguUGCCGCgGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 12462 0.74 0.271442
Target:  5'- aCGCGgUGCAGgcCGGCGGCGUguucuggcgCGGCCu -3'
miRNA:   3'- -GUGCaACGUCaaGUUGCCGCG---------GUCGG- -5'
26798 3' -54.2 NC_005808.1 + 12607 0.69 0.538503
Target:  5'- gCACGaugGCccGUUCGACGGCuGCauccaGGCCg -3'
miRNA:   3'- -GUGCaa-CGu-CAAGUUGCCG-CGg----UCGG- -5'
26798 3' -54.2 NC_005808.1 + 13228 0.69 0.516695
Target:  5'- cCACGUaguccUGCGuuuccUUCGGCaguaGCGCCAGCCa -3'
miRNA:   3'- -GUGCA-----ACGUc----AAGUUGc---CGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 13316 0.68 0.582974
Target:  5'- gGCGUUGUAGgcggcguaggcuUUCGGCaGGuCGCC-GCCg -3'
miRNA:   3'- gUGCAACGUC------------AAGUUG-CC-GCGGuCGG- -5'
26798 3' -54.2 NC_005808.1 + 13410 0.66 0.66207
Target:  5'- gCAuCGUUGCGGUaacgguucUCGucccACGGCaggcccGCCAGCUu -3'
miRNA:   3'- -GU-GCAACGUCA--------AGU----UGCCG------CGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 13792 0.68 0.582974
Target:  5'- gCGCGUUGCuGgUCAGuuUGcGCGCCuguGCCu -3'
miRNA:   3'- -GUGCAACGuCaAGUU--GC-CGCGGu--CGG- -5'
26798 3' -54.2 NC_005808.1 + 14749 0.69 0.527557
Target:  5'- aCACGUUcuugagcaGCGGcgCGGcCGGCGCCA-CCg -3'
miRNA:   3'- -GUGCAA--------CGUCaaGUU-GCCGCGGUcGG- -5'
26798 3' -54.2 NC_005808.1 + 15325 0.71 0.389417
Target:  5'- gCGCGgcgaacUGCGGUUCAuugccucggccaagaGCcuggGGCGCCGGCUg -3'
miRNA:   3'- -GUGCa-----ACGUCAAGU---------------UG----CCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 15442 0.67 0.639454
Target:  5'- cCGCG-UGCGGcgcgugggggacUUCGagugaugcgcGCGGCGUCAGCUu -3'
miRNA:   3'- -GUGCaACGUC------------AAGU----------UGCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 15517 0.71 0.423718
Target:  5'- uGCGgugauggGCAGgcCGauaugcACGGUGCCGGCCu -3'
miRNA:   3'- gUGCaa-----CGUCaaGU------UGCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 15555 0.69 0.516695
Target:  5'- cCACGUc-CAGgUCAAUGGCGCC-GUCa -3'
miRNA:   3'- -GUGCAacGUCaAGUUGCCGCGGuCGG- -5'
26798 3' -54.2 NC_005808.1 + 16049 0.7 0.46387
Target:  5'- ---aUUGCAcGUUCAaggaggGCGGCGCCAuGCUg -3'
miRNA:   3'- gugcAACGU-CAAGU------UGCCGCGGU-CGG- -5'
26798 3' -54.2 NC_005808.1 + 16178 0.66 0.717886
Target:  5'- cCGCGUcGgAGUUCAcCGaCGCCAcgcGCCa -3'
miRNA:   3'- -GUGCAaCgUCAAGUuGCcGCGGU---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.