Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26798 | 3' | -54.2 | NC_005808.1 | + | 32264 | 0.7 | 0.474217 |
Target: 5'- aCACGccGCAG--CGACGGCuaCGGCCu -3' miRNA: 3'- -GUGCaaCGUCaaGUUGCCGcgGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 31537 | 0.69 | 0.516695 |
Target: 5'- aCACGUUcgaGCAGUUCGucgccaauGCGGCcGagaaCGGCCc -3' miRNA: 3'- -GUGCAA---CGUCAAGU--------UGCCG-Cg---GUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 30155 | 0.67 | 0.614548 |
Target: 5'- cCGCGUcggacaucagcgGCAGU----UGGCGCCAGUCg -3' miRNA: 3'- -GUGCAa-----------CGUCAaguuGCCGCGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 29319 | 0.69 | 0.484679 |
Target: 5'- gCACuucaagGCGGU--GGCGGuCGCCGGCCa -3' miRNA: 3'- -GUGcaa---CGUCAagUUGCC-GCGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 28648 | 0.68 | 0.594222 |
Target: 5'- cCGCGc-GCAGUgccaGAuCGGUGCCGGCg -3' miRNA: 3'- -GUGCaaCGUCAag--UU-GCCGCGGUCGg -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 28528 | 0.7 | 0.450598 |
Target: 5'- gGCGcUGCuuGUUgAACGGCacgaccuugcggccGCCGGCCa -3' miRNA: 3'- gUGCaACGu-CAAgUUGCCG--------------CGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 28388 | 0.71 | 0.395007 |
Target: 5'- -gUGUUcCAGUUCGacgccggcggcGCGGCGCCAGUa -3' miRNA: 3'- guGCAAcGUCAAGU-----------UGCCGCGGUCGg -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 28272 | 0.69 | 0.505924 |
Target: 5'- gGCccgGCAGUUCAgccaagGCGcGCGCCAGUUc -3' miRNA: 3'- gUGcaaCGUCAAGU------UGC-CGCGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 28186 | 0.67 | 0.61681 |
Target: 5'- cCACGcccaGCAGgu--GCGGCGCCuuguccaggucGGCCa -3' miRNA: 3'- -GUGCaa--CGUCaaguUGCCGCGG-----------UCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 27827 | 0.74 | 0.250802 |
Target: 5'- gCGCGcUGCccg-CggUGGCGCCGGCCg -3' miRNA: 3'- -GUGCaACGucaaGuuGCCGCGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 27584 | 0.66 | 0.684568 |
Target: 5'- gCACcg-GCAGca-GGCGGCGCCAGa- -3' miRNA: 3'- -GUGcaaCGUCaagUUGCCGCGGUCgg -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 27491 | 0.66 | 0.717886 |
Target: 5'- cCugGUagGCAGcuauuACGGCGCgCGGUCg -3' miRNA: 3'- -GugCAa-CGUCaagu-UGCCGCG-GUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 26155 | 0.67 | 0.62813 |
Target: 5'- cUACGacGCcguGUUCAACGcCGCCGGCg -3' miRNA: 3'- -GUGCaaCGu--CAAGUUGCcGCGGUCGg -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 25660 | 0.69 | 0.538503 |
Target: 5'- gCACGcUGC---UgGACGGCGCCGuGCCc -3' miRNA: 3'- -GUGCaACGucaAgUUGCCGCGGU-CGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 25597 | 0.67 | 0.650772 |
Target: 5'- uGCGgcccagGCAGUggCAaccacggcggcGCGGuCGCCAGCa -3' miRNA: 3'- gUGCaa----CGUCAa-GU-----------UGCC-GCGGUCGg -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 25388 | 0.66 | 0.684568 |
Target: 5'- cCGCGUccUGCAacgcuccUUCGGCGGCGgcgaaaUCAGCCc -3' miRNA: 3'- -GUGCA--ACGUc------AAGUUGCCGC------GGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 24693 | 0.68 | 0.582974 |
Target: 5'- cCACGcccagGCuGUcCAuCGGUGCCAGUCg -3' miRNA: 3'- -GUGCaa---CGuCAaGUuGCCGCGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 24546 | 0.71 | 0.404437 |
Target: 5'- cCGCGUggucgcGCAGcgcggCGAUGGCgagGCCGGCCa -3' miRNA: 3'- -GUGCAa-----CGUCaa---GUUGCCG---CGGUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 24295 | 0.71 | 0.395007 |
Target: 5'- cCACGUggggGCGGUgagguCGGCGagCAGCCg -3' miRNA: 3'- -GUGCAa---CGUCAaguu-GCCGCg-GUCGG- -5' |
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26798 | 3' | -54.2 | NC_005808.1 | + | 24162 | 0.68 | 0.594222 |
Target: 5'- uCACGUuuucggUGCAGgacUCGGCGGacaaCGCCAccuucGCCg -3' miRNA: 3'- -GUGCA------ACGUCa--AGUUGCC----GCGGU-----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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