miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26798 3' -54.2 NC_005808.1 + 42484 0.67 0.639454
Target:  5'- aCGCGaaGUGGUUgGACGGCGCgCAGa- -3'
miRNA:   3'- -GUGCaaCGUCAAgUUGCCGCG-GUCgg -5'
26798 3' -54.2 NC_005808.1 + 42258 0.66 0.684568
Target:  5'- gACGgccUGCuGcgCGACGccacCGCCAGCCu -3'
miRNA:   3'- gUGCa--ACGuCaaGUUGCc---GCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 41599 0.71 0.385719
Target:  5'- gACGcUGCGGUgaaCcACGGCaCCGGCCa -3'
miRNA:   3'- gUGCaACGUCAa--GuUGCCGcGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 41536 0.67 0.64964
Target:  5'- gCGCGUUacuggacGcCGGUUC-GCGGCgacaugcugccGCCGGCCg -3'
miRNA:   3'- -GUGCAA-------C-GUCAAGuUGCCG-----------CGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 40241 0.66 0.66207
Target:  5'- cCACG-UGCAGgcCGaauuGCGGCGCaCGcgcGCCa -3'
miRNA:   3'- -GUGCaACGUCaaGU----UGCCGCG-GU---CGG- -5'
26798 3' -54.2 NC_005808.1 + 39048 0.66 0.717886
Target:  5'- cCGCuGcUGCGcuGUUCGGCGGCaGCUGGCa -3'
miRNA:   3'- -GUG-CaACGU--CAAGUUGCCG-CGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 38306 0.69 0.538503
Target:  5'- gCugG-UGCAGUUCAccgccgacACGGCcaucaccauGCCGGCg -3'
miRNA:   3'- -GugCaACGUCAAGU--------UGCCG---------CGGUCGg -5'
26798 3' -54.2 NC_005808.1 + 38202 0.68 0.594222
Target:  5'- gCACGcucaagGCccGGcgCGACGGCGCCuGGCUg -3'
miRNA:   3'- -GUGCaa----CG--UCaaGUUGCCGCGG-UCGG- -5'
26798 3' -54.2 NC_005808.1 + 37757 0.67 0.605504
Target:  5'- gCugGccGCuuuccGUgaauucgaCGACGGCGCCGGCCc -3'
miRNA:   3'- -GugCaaCGu----CAa-------GUUGCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 37474 1.12 0.000509
Target:  5'- gCACGUUGCAGUUCAACGGCGCCAGCCg -3'
miRNA:   3'- -GUGCAACGUCAAGUUGCCGCGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 37006 0.66 0.717886
Target:  5'- aACGagGCGGacaUCGacACGGUGgCGGCCa -3'
miRNA:   3'- gUGCaaCGUCa--AGU--UGCCGCgGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 36130 0.7 0.433562
Target:  5'- gCGCGgcgUGCAGUUCcugcgcGACGGCGac-GCCu -3'
miRNA:   3'- -GUGCa--ACGUCAAG------UUGCCGCgguCGG- -5'
26798 3' -54.2 NC_005808.1 + 35286 0.79 0.132591
Target:  5'- uGCGUUcGCAGaccaUCGACGGCGCCAuCCg -3'
miRNA:   3'- gUGCAA-CGUCa---AGUUGCCGCGGUcGG- -5'
26798 3' -54.2 NC_005808.1 + 34889 0.84 0.05659
Target:  5'- uGCGcUGCAGUUCAuCGGCaaGCCGGCCg -3'
miRNA:   3'- gUGCaACGUCAAGUuGCCG--CGGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 34883 0.66 0.711276
Target:  5'- aGCGgUGCAGgcggugugggaucacUUCGAgGGCuaCCGGCCg -3'
miRNA:   3'- gUGCaACGUC---------------AAGUUgCCGc-GGUCGG- -5'
26798 3' -54.2 NC_005808.1 + 34822 0.66 0.66207
Target:  5'- uCGCcucGCAGggCGAaGGCGCgAGCCu -3'
miRNA:   3'- -GUGcaaCGUCaaGUUgCCGCGgUCGG- -5'
26798 3' -54.2 NC_005808.1 + 33856 0.66 0.695743
Target:  5'- cCAUGUUGaCGGU--AGCGccGCGCCcGCCg -3'
miRNA:   3'- -GUGCAAC-GUCAagUUGC--CGCGGuCGG- -5'
26798 3' -54.2 NC_005808.1 + 33402 0.71 0.395007
Target:  5'- cCGCGccgccgaGCAGgccaacgUCGACGGCGCCAaguugucgcuGCCg -3'
miRNA:   3'- -GUGCaa-----CGUCa------AGUUGCCGCGGU----------CGG- -5'
26798 3' -54.2 NC_005808.1 + 33176 0.69 0.538503
Target:  5'- --aGUUGCGGaa-GugGGCGCCcucggcacGGCCa -3'
miRNA:   3'- gugCAACGUCaagUugCCGCGG--------UCGG- -5'
26798 3' -54.2 NC_005808.1 + 32518 0.66 0.717886
Target:  5'- cCGCGcccgUGCAGgcUggUGaUGCCGGCCa -3'
miRNA:   3'- -GUGCa---ACGUCaaGuuGCcGCGGUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.