miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26798 5' -62.1 NC_005808.1 + 21745 0.69 0.192085
Target:  5'- uUGGGCgCGGCCGCg---UCCAcauaggacagGCCGCc -3'
miRNA:   3'- -ACCCG-GCCGGCGgacaAGGU----------UGGCGu -5'
26798 5' -62.1 NC_005808.1 + 8036 0.68 0.224594
Target:  5'- aGGGCCGccguccuuGCCGCCg--UCCAugaCGCGc -3'
miRNA:   3'- aCCCGGC--------CGGCGGacaAGGUug-GCGU- -5'
26798 5' -62.1 NC_005808.1 + 28666 0.67 0.242537
Target:  5'- cGGuGCCGGCgGCCUcg-CCAG-CGCGg -3'
miRNA:   3'- aCC-CGGCCGgCGGAcaaGGUUgGCGU- -5'
26798 5' -62.1 NC_005808.1 + 38548 0.67 0.255151
Target:  5'- cUGGGCCGcUgGCCUGccgCUcGCCGCGg -3'
miRNA:   3'- -ACCCGGCcGgCGGACaa-GGuUGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 1762 0.68 0.213268
Target:  5'- -uGGCCGGCCugcGCCUGgcgcgUCgGGCCGa- -3'
miRNA:   3'- acCCGGCCGG---CGGACa----AGgUUGGCgu -5'
26798 5' -62.1 NC_005808.1 + 4173 0.68 0.224016
Target:  5'- cUGGuaGCCGGCCGCCucgauggcgggcaUGUU--GGCCGCGa -3'
miRNA:   3'- -ACC--CGGCCGGCGG-------------ACAAggUUGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 16985 0.68 0.224594
Target:  5'- cUGGcGaCCGcGCCGCCgugGUUgCCAcugccuggGCCGCAg -3'
miRNA:   3'- -ACC-C-GGC-CGGCGGa--CAA-GGU--------UGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 31694 0.66 0.289036
Target:  5'- cGGGCaGGUCGCCa-UUCCGguggaggaauacGCCGCGc -3'
miRNA:   3'- aCCCGgCCGGCGGacAAGGU------------UGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 36244 0.66 0.296223
Target:  5'- gUGGGCCGGuUCGCCac--CCAGaCGCAc -3'
miRNA:   3'- -ACCCGGCC-GGCGGacaaGGUUgGCGU- -5'
26798 5' -62.1 NC_005808.1 + 5264 0.66 0.311011
Target:  5'- gGGGUCGGCaauGCgUcGUUCCAgcgucgauuGCUGCAu -3'
miRNA:   3'- aCCCGGCCGg--CGgA-CAAGGU---------UGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 17304 0.68 0.213268
Target:  5'- aGGGCCGGCCGCa-----CGACCuCAa -3'
miRNA:   3'- aCCCGGCCGGCGgacaagGUUGGcGU- -5'
26798 5' -62.1 NC_005808.1 + 12471 0.68 0.202436
Target:  5'- -aGGCCGGCgGCgUGUUCUGG-CGCGg -3'
miRNA:   3'- acCCGGCCGgCGgACAAGGUUgGCGU- -5'
26798 5' -62.1 NC_005808.1 + 23744 0.7 0.168219
Target:  5'- gUGGGCaugGGCCGCCcgGccUUCUAcauGCCGCGc -3'
miRNA:   3'- -ACCCGg--CCGGCGGa-C--AAGGU---UGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 18191 0.71 0.131885
Target:  5'- cGGGCCGGCUGCgCUucUUCAACuugCGCAg -3'
miRNA:   3'- aCCCGGCCGGCG-GAcaAGGUUG---GCGU- -5'
26798 5' -62.1 NC_005808.1 + 7025 0.71 0.121475
Target:  5'- aUGGGCguuUGuGCCGCCUGUUgCAGCaggCGCAu -3'
miRNA:   3'- -ACCCG---GC-CGGCGGACAAgGUUG---GCGU- -5'
26798 5' -62.1 NC_005808.1 + 15165 0.72 0.102911
Target:  5'- aGGGCCugcGGCCGCCgggcgcgGUgcgCCAGgCGCGc -3'
miRNA:   3'- aCCCGG---CCGGCGGa------CAa--GGUUgGCGU- -5'
26798 5' -62.1 NC_005808.1 + 30772 0.73 0.094662
Target:  5'- cGcGGCgCGGCCgGUCUGUUCCAGuCCGUc -3'
miRNA:   3'- aC-CCG-GCCGG-CGGACAAGGUU-GGCGu -5'
26798 5' -62.1 NC_005808.1 + 891 0.75 0.067346
Target:  5'- aGGGCC-GCCGCgUUGUUCCAgaaguugACCGCGc -3'
miRNA:   3'- aCCCGGcCGGCG-GACAAGGU-------UGGCGU- -5'
26798 5' -62.1 NC_005808.1 + 36213 0.78 0.041569
Target:  5'- cGGGCCGGCCgGCCUGcgCCugauuGCCGaCGu -3'
miRNA:   3'- aCCCGGCCGG-CGGACaaGGu----UGGC-GU- -5'
26798 5' -62.1 NC_005808.1 + 7168 0.66 0.318614
Target:  5'- aGGGCCGGgCGCUUGUcggaUUCGGggGCGa -3'
miRNA:   3'- aCCCGGCCgGCGGACA----AGGUUggCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.